PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02924.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 705aa    MW: 77929.9 Da    PI: 9.0956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02924.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.91.2e-1323357041373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l+e L++cA+av++++  +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++y++l+++e +    se l+++
  Zpz_sc02924.1.g00030.1.am.mk 335 LKEMLITCARAVEENNSFAINLMIPELRKMVSVSGEPLERLGAYMVEGLVARLASSGNSIYRSLKCKEPK---GSELLSYM 412
                                   5789*****************************************************************9...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++++e++P++kf+++ aN aI ea++ge+r+HiiDf i qG+QW++LlqaLa+Rp+ pp +RiTg++++ s   +   le 
  Zpz_sc02924.1.g00030.1.am.mk 413 SFLYEACPYFKFGYMSANGAIAEAIKGEDRIHIIDFHIAQGTQWLCLLQALAARPGAPPFVRITGIDDSFSAyaRGGGLEL 493
                                   ********************************************************************777688999**** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +g+rL+++A+ ++vpfef+  va + +d+e+e+L + pgEa+aVn+ l+lh+++de vs++++rd++L+lvkslsPkv+++
  Zpz_sc02924.1.g00030.1.am.mk 494 VGKRLSHVAALCKVPFEFHG-VAISGNDIEVEHLGIVPGEAVAVNFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVLTL 573
                                   ********************.6889******************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   veqe+++n+++F++rf+e+l+yy+a+f+s++  lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++a
  Zpz_sc02924.1.g00030.1.am.mk 574 VEQESNTNTAPFAQRFAETLDYYTAIFESIDLALPRDDRERINMEQHCLAREIVNLVACEGEERVERHELFGKWKSRLTMA 654
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   GF+p pls  +++++k+ll++++ + y++ e++g l+lgWk+rpLv+ SaW
  Zpz_sc02924.1.g00030.1.am.mk 655 GFRPSPLSALVNDTIKTLLQTYSPN-YKLLERDGVLYLGWKNRPLVVSSAW 704
                                   ***********************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.582309686IPR005202Transcription factor GRAS
PfamPF035144.1E-130335704IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MRNHLPCGRE AASLITDRYH SSTEKSTATA ASGRDQSYVG FVWAFVRLRR HPRLGRFLFC  60
PVVAVRKETV RARVPCLRVR AGQERLDTEA RRGARACSRH ASRSHESGPR ATRPPRAGRR  120
HGTTRSTTPR TTCLVSSTPS YRALVALTSH AFTAPSSKAV RFLHGAASSS RKGPSRGARR  180
RSGRARESVK HQLQSIAAVA LLFYRAHNDG RIVLGFACGR LFVWIDLCSA LSCFCCSSCM  240
RHDPPSNHSH PTEPGSGSPL SQEDSQSAST NGNGSPVSSV TEDPDDLKQK LKDLESAMLG  300
TDSEIVNSLE VSVANKLSLE HEEWVHMMSM PRGNLKEMLI TCARAVEENN SFAINLMIPE  360
LRKMVSVSGE PLERLGAYMV EGLVARLASS GNSIYRSLKC KEPKGSELLS YMSFLYEACP  420
YFKFGYMSAN GAIAEAIKGE DRIHIIDFHI AQGTQWLCLL QALAARPGAP PFVRITGIDD  480
SFSAYARGGG LELVGKRLSH VAALCKVPFE FHGVAISGND IEVEHLGIVP GEAVAVNFTL  540
ELHHIPDEAV STANHRDRIL RLVKSLSPKV LTLVEQESNT NTAPFAQRFA ETLDYYTAIF  600
ESIDLALPRD DRERINMEQH CLAREIVNLV ACEGEERVER HELFGKWKSR LTMAGFRPSP  660
LSALVNDTIK TLLQTYSPNY KLLERDGVLY LGWKNRPLVV SSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-633377046374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02924.1.g00030.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLK3ZS380.0K3ZS38_SETIT; Uncharacterized protein
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]