PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02913.1.g00070.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 390aa MW: 43030.7 Da PI: 7.2465

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02913.1.g00070.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.2e-51	8	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp k+ +e+ewyfFs+rd+ky++g+r+nra+ Zpz_sc02913.1.g00070.1.sm.mkhc 8 LPAGFRFHPTDEELIVHYLMNQAAAVPCPV-PIIAEVNIYQCDPWDLPPKALFGETEWYFFSPRDRKYPNGTRPNRAAG 85 799*************************.88**********96666789******************** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++s+ ++e++g+kk Lvfy+g+ pkg+ktdW+mheyrl Zpz_sc02913.1.g00070.1.sm.mkhc 86 SGYWKATGTDKAIVSApTSENIGVKKALVFYRGKPPKGVKTDWIMHEYRL 135 **********9989999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-64	3	165	IPR003441	NAC domain
PROSITE profile	PS51005	59.171	8	165	IPR003441	NAC domain
Pfam	PF02365	6.4E-26	9	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MATRMPSLPA GFRFHPTDEE LIVHYLMNQA AAVPCPVPII AEVNIYQCDP WDLPPKALFG 60 ETEWYFFSPR DRKYPNGTRP NRAAGSGYWK ATGTDKAIVS APTSENIGVK KALVFYRGKP 120 PKGVKTDWIM HEYRLTVANN KSTRRRGSSS SMRLDDWVLC RIYKKSNNFQ YFSDLQDQDG 180 SSTVEEPDSS LNNNSMTTMN NGGAPSPKSE EAAHANGDDQ QQFHDPGHLT TSMTKSCSLT 240 DLLNTIDYST LSQLLLDAPP AETDHRTQLQ QSPLIYTTPA WQQPHNNYNN YSCNMNNTAT 300 SVNMAQDYGA SYNGLKRKRV MTTDGAAGSF DDGGSGLKRK LQLPSDSRTG GGFFFGSSSG 360 SSYCNQQLAE AASTGGFQYS GLLSHPFLNQ

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MATRMPSLPA GFRFHPTDEE LIVHYLMNQA AAVPCPVPII AEVNIYQCDP WDLPPKALFG  60
ETEWYFFSPR DRKYPNGTRP NRAAGSGYWK ATGTDKAIVS APTSENIGVK KALVFYRGKP  120
PKGVKTDWIM HEYRLTVANN KSTRRRGSSS SMRLDDWVLC RIYKKSNNFQ YFSDLQDQDG  180
SSTVEEPDSS LNNNSMTTMN NGGAPSPKSE EAAHANGDDQ QQFHDPGHLT TSMTKSCSLT  240
DLLNTIDYST LSQLLLDAPP AETDHRTQLQ QSPLIYTTPA WQQPHNNYNN YSCNMNNTAT  300
SVNMAQDYGA SYNGLKRKRV MTTDGAAGSF DDGGSGLKRK LQLPSDSRTG GGFFFGSSSG  360
SSYCNQQLAE AASTGGFQYS GLLSHPFLNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-73	7	170	14	173	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02913.1.g00070.1.sm.mkhc

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069257	1e-141	AK069257.1 Oryza sativa Japonica Group cDNA clone:J023011O06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828039.1	1e-164	NAC transcription factor 29-like
Swissprot	K4BNG7	5e-82	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A2S3IC67	1e-162	A0A2S3IC67_9POAL; Uncharacterized protein
STRING	Si026530m	1e-157	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	6e-73	NAC domain containing protein 47

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]