PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02866.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 720aa MW: 77234.9 Da PI: 9.8174

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02866.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	303.5	5.1e-93	70	390	1	327
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 lv++L++cA a+++gd + aq+ L + + a ++++ + R+a +f+ AL++rl+ ++ + a pp +t Zpz_sc02866.1.g00070.1.am.mk 70 LVHVLVTCAGAIQAGDYSTAQSNLRDAHSIlaAISTATGIGRVAEHFAAALSQRLFPAYPHSAPAPPPPAT-------PGE 143 689*********************999985556669***************55555544444333.......345 PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 ++ f+e+ P+lkf++ taN aIl+a+eg++rvH++D+ ++qGlQWp L++aL++R++gpp lRiTg+g+ +g+++el+e Zpz_sc02866.1.g00070.1.am.mk 144 LQHQFYEAGPYLKFAYSTANMAILDAFEGCDRVHVVDLALMQGLQWPELIHALSKRSGGPPYLRITGIGPTPTGNRDELHE 224 5677**************************************************************8888*** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkv 238 +g rLa++A++l+vpf+f+ + a++l+ l++++L++ gE++aVn++lqlhrll ++ + + ++d++L+ +++++P+v Zpz_sc02866.1.g00070.1.am.mk 225 VGLRLAELARSLNVPFSFRRVCADQLDGLRPWMLNIVAGEVVAVNSILQLHRLLVDPDADPTvpaPIDTLLEWLRGVRPHV 305 *************************************************96655444444499********** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 ++vveqeadhn++s+l+rf++al +y+a+fds+ea + +++l+ ei +vv+ eg++r+erhe +++Wr+rl Zpz_sc02866.1.g00070.1.am.mk 306 FTVVEQEADHNKPSLLDRFTNALFHYAAMFDSMEAA----GGSGGALAEAYLRAEIFDVVCGEGSARTERHELASRWRARL 382 *****************************998....56677788888************************** PP GRAS 320 eeaGFkpv 327 +aG++p Zpz_sc02866.1.g00070.1.am.mk 383 ARAGLTPQ 390 **9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.676	44	417	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-90	70	390	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MDPASFAALT GAVPLPSPSA TTNGAVYCVN PGLYASVQPH MLVQPAAPAA APEADAARRQ 60 QAEEAAAIRL VHVLVTCAGA IQAGDYSTAQ SNLRDAHSIL AAISTATGIG RVAEHFAAAL 120 SQRLFPAYPH SAPAPPPPAT PGELQHQFYE AGPYLKFAYS TANMAILDAF EGCDRVHVVD 180 LALMQGLQWP ELIHALSKRS GGPPYLRITG IGPTPTGNRD ELHEVGLRLA ELARSLNVPF 240 SFRRVCADQL DGLRPWMLNI VAGEVVAVNS ILQLHRLLVD PDADPTVPAP IDTLLEWLRG 300 VRPHVFTVVE QEADHNKPSL LDRFTNALFH YAAMFDSMEA AGGSGGALAE AYLRAEIFDV 360 VCGEGSARTE RHELASRWRA RLARAGLTPQ CSECSRELDT NLHVGERRAA HGSQPVKCSL 420 QRRCAPYSKP SPATAPTGIR SSSTPPCDAT HGHALTSCRC RAFCSFCSRQ PQARTLQHAA 480 ERSTNQEADE AQTVRRINQT TTAGAGVGRV CCRVGCHGGP FHQLLAQTSG SRQRSQQRAS 540 PSDGSKHDDD GAVVAASSVR GGRRGVRRGG AEFDQFKADG AAPAPPTGAL APARRNSRSR 600 SLAPQRRHSV QTYWARRTYR RLGSPSRRLR VARLGGRKQQ PGSIRAGSIP WKKLARAIAL 660 PARLXXXXXX XXXXPEAGLI ARRVPRARAR GSGGGGDDFE RRMMAHIYNA AVTPELPCAA

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MDPASFAALT GAVPLPSPSA TTNGAVYCVN PGLYASVQPH MLVQPAAPAA APEADAARRQ  60
QAEEAAAIRL VHVLVTCAGA IQAGDYSTAQ SNLRDAHSIL AAISTATGIG RVAEHFAAAL  120
SQRLFPAYPH SAPAPPPPAT PGELQHQFYE AGPYLKFAYS TANMAILDAF EGCDRVHVVD  180
LALMQGLQWP ELIHALSKRS GGPPYLRITG IGPTPTGNRD ELHEVGLRLA ELARSLNVPF  240
SFRRVCADQL DGLRPWMLNI VAGEVVAVNS ILQLHRLLVD PDADPTVPAP IDTLLEWLRG  300
VRPHVFTVVE QEADHNKPSL LDRFTNALFH YAAMFDSMEA AGGSGGALAE AYLRAEIFDV  360
VCGEGSARTE RHELASRWRA RLARAGLTPQ CSECSRELDT NLHVGERRAA HGSQPVKCSL  420
QRRCAPYSKP SPATAPTGIR SSSTPPCDAT HGHALTSCRC RAFCSFCSRQ PQARTLQHAA  480
ERSTNQEADE AQTVRRINQT TTAGAGVGRV CCRVGCHGGP FHQLLAQTSG SRQRSQQRAS  540
PSDGSKHDDD GAVVAASSVR GGRRGVRRGG AEFDQFKADG AAPAPPTGAL APARRNSRSR  600
SLAPQRRHSV QTYWARRTYR RLGSPSRRLR VARLGGRKQQ PGSIRAGSIP WKKLARAIAL  660
PARLXXXXXX XXXXPEAGLI ARRVPRARAR GSGGGGDDFE RRMMAHIYNA AVTPELPCAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-36	52	387	2	328	Protein SCARECROW
5b3h_D	2e-36	52	387	2	328	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02866.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963578.1	1e-165	DELLA protein DWARF8
TrEMBL	A0A1E5UN44	1e-171	A0A1E5UN44_9POAL; DELLA protein DWARF8
STRING	Si024429m	1e-165	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	1e-66	GRAS family protein