PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02840.1.g00090.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 252aa MW: 27062.7 Da PI: 6.6768 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 148.1 | 1.9e-46 | 45 | 139 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdr++Pianv+r+m++ lP +akis+dak+++qecvsefisfvt+ea+d+c+ e+rkt++++d++wa+ lGf+dy++p Zpz_sc02840.1.g00090.1.am.mk 45 REQDRLMPIANVVRVMRRGLPPHAKISDDAKDVIQECVSEFISFVTGEANDRCHGEHRKTVTAEDVVWAMERLGFDDYLAP 125 89******************************************************************************* PP NF-YB 83 lkvylkkyrelege 96 +k+y+++ r+ +g+ Zpz_sc02840.1.g00090.1.am.mk 126 IKAYVRRMRDYDGA 139 *********99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-43 | 42 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.34E-33 | 47 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-23 | 51 | 114 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.1E-13 | 78 | 96 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 81 | 97 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.1E-13 | 97 | 115 | No hit | No description |
PRINTS | PR00615 | 2.1E-13 | 116 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAMVPQSPIA NAPCPLAVEL EPAIPMEAAA ATEPPAPATE LVMIREQDRL MPIANVVRVM 60 RRGLPPHAKI SDDAKDVIQE CVSEFISFVT GEANDRCHGE HRKTVTAEDV VWAMERLGFD 120 DYLAPIKAYV RRMRDYDGAG RGGGDNAQTR VHVHHAPAPP LPMAAPHGVQ VQAPPVAFPN 180 SALAAHRYGA VPLQVQFGAA PRFRAQRNVL GGERSVAAAY HGAPTIGAEE TSSSTVEQPT 240 ADAAPRRLHY PN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-46 | 44 | 135 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02840.1.g00090.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288035 | 1e-100 | AB288035.1 Oryza sativa Japonica Group OsHAP3D mRNA for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK109660 | 1e-100 | AK109660.1 Oryza sativa Japonica Group cDNA clone:002-141-E08, full insert sequence. | |||
GenBank | AP004791 | 1e-100 | AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10. | |||
GenBank | AP014962 | 1e-100 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY062183 | 1e-100 | AY062183.1 Oryza sativa HAP3 transcriptional-activator (LEC1A) mRNA, complete cds. | |||
GenBank | CP012614 | 1e-100 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966908.1 | 1e-58 | nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | K3Y2D4 | 1e-60 | K3Y2D4_SETIT; Uncharacterized protein | ||||
STRING | Si008357m | 2e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-45 | nuclear factor Y, subunit B6 |