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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02840.1.g00080.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 226aa MW: 25405.3 Da PI: 6.3624 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 75.1 | 1.1e-23 | 44 | 130 | 7 | 93 |
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +Pi+ v+rim+ + P n+ki d+k+ +++c+ ef + +t ea+ ++e r+ ++gdd++ al+ +Gf dyv pl++ l Zpz_sc02840.1.g00080.1.sm.mk 44 KIPITAVTRIMHCAQPRNSKINADTKDAMNQCILEFTARLTHEAAWVGKEESRRMMSGDDIILALGRMGFSDYVGPLTLLL 124 68******************************************************************************* PP NF-YB 88 kkyrel 93 ++y e Zpz_sc02840.1.g00080.1.sm.mk 125 QRYCES 130 ***875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 7.3E-12 | 44 | 108 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.1E-21 | 45 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.1E-17 | 45 | 130 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MERAKAQGDI GSEAKDTLVR LGVRLQLMIV TWLRDGSTIR RLHKIPITAV TRIMHCAQPR 60 NSKINADTKD AMNQCILEFT ARLTHEAAWV GKEESRRMMS GDDIILALGR MGFSDYVGPL 120 TLLLQRYCES RAIMPRGWQT ELASQEPMSS SQVVVEQQLQ AAMPTVGVEL QPPEPDLTLG 180 LAPPAPRHVT ELELHEEVYK VWPRSAGPMP QPMATNELFY VERAFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 5e-17 | 45 | 127 | 9 | 91 | NF-YB |
4awl_B | 6e-17 | 45 | 127 | 10 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 6e-17 | 45 | 127 | 10 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02840.1.g00080.1.sm.mk |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.6 | 1e-20 | nuclear factor Y, subunit B1 |