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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02840.1.g00070.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 186aa MW: 20613.7 Da PI: 5.0292 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 83.3 | 3.1e-26 | 13 | 101 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 r +P++ v+rim+ +lP+n+ki d+k+ +++c+sef + +t ea+ ++e r+ ++gdd++ al+ +Gf + v pl+++ Zpz_sc02840.1.g00070.1.sm.mk 13 RRIPMTTVTRIMHCALPQNSKINTDTKDAMNQCISEFTARLTHEAARVGKEESRRIMSGDDIILALGRMGFSNCVGPLTLF 93 789****************************************************************************** PP NF-YB 87 lkkyrele 94 l++y e + Zpz_sc02840.1.g00070.1.sm.mk 94 LQRYHESQ 101 ****9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.1E-24 | 10 | 103 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.22E-19 | 13 | 103 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-14 | 14 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAARMEAPPE DFRRIPMTTV TRIMHCALPQ NSKINTDTKD AMNQCISEFT ARLTHEAARV 60 GKEESRRIMS GDDIILALGR MGFSNCVGPL TLFLQRYHES QGIMPRGWQD ELASQELMLS 120 SQVVVEQQLP AAVPTVGVEL QLPELNLTLG LALPVPRDVT ELGPHEDVYK VWPRPAGPMP 180 LADGNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-20 | 13 | 99 | 6 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-20 | 13 | 99 | 6 | 92 | Transcription factor HapC (Eurofung) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02840.1.g00070.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 4e-24 | nuclear factor Y, subunit B2 |