PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02744.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 510aa    MW: 54523.5 Da    PI: 8.3271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02744.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.8e-27329388258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H++
  Zpz_sc02744.1.g00030.1.am.mk 329 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnfyGCEAKKKVQRLDDDPFTYEVTYCGNHTC 388
                                   8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-26325388IPR003657WRKY domain
SuperFamilySSF1182904.32E-24327388IPR003657WRKY domain
SMARTSM007744.8E-37328390IPR003657WRKY domain
PfamPF031064.0E-25329388IPR003657WRKY domain
PROSITE profilePS5081121.494329386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MLHVVVLASL AVLCRGLGSS KEKFHQVVGQ RREDDIASSP PSPSEATQTP LFMHVLARRP  60
SPHHPFTFDL GDTTNIKQKI AGDDPLGQQG AMDDVLAQIS DAFRLARELM DELPASQNDP  120
AYLANRCHSI IRAYVAAIRM LQPHGGADVA AQPPPPPFAS DLLRLWCADK QVAGGTAANP  180
FLGSPPSMSQ LGRLLESSSS SFHTLAEAFG GARPAPEMAR TGPDVAGTSG GPVRRVAPSS  240
RGSTRIQPRQ GRRRYVRSWR TLGFCWLTCS RVNLAVKSSN LGGDPLFYVI GVERPPNFPR  300
AHLARESGER LTVFVPVQRA GGNMDQPPDD GYTWRKYGQK DILGSRYPRS YYRCTHKNFY  360
GCEAKKKVQR LDDDPFTYEV TYCGNHTCLT STTPLLTLPA TAGTRADTVA ANSPTSSAAI  420
LAHPDITMAA AEHHPAPALS TSIQLGMTWM PSSLVGASST SAGAGEGSGA QAHVPTAAGT  480
GRDVEYPLMD LTDAIFNSGS SGGSSMDAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21329388968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02744.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878171e-89AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681211.11e-113probable WRKY transcription factor 53
TrEMBLA0A2S3HD541e-108A0A2S3HD54_9POAL; Uncharacterized protein
TrEMBLA0A368QKD61e-109A0A368QKD6_SETIT; Uncharacterized protein
STRINGSi025307m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-34WRKY DNA-binding protein 55