PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02666.1.g00120.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 32045.1 Da    PI: 7.7863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02666.1.g00120.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.4e-26959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  k+ien s rqvtfskRr g+lKKA+EL +LCda++ viifs +gk+yeyss
  Zpz_sc02666.1.g00120.1.sm.mk  9 KKIENPSSRQVTFSKRRMGLLKKANELAILCDAQIGVIIFSDSGKMYEYSS 59
                                  68***********************************************96 PP
2K-box42.52.8e-15851611490
                         K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                                   +++  +e++++k+e + L+    +++ +dL  Lsl++  +LeqqLe sl k+R +K+ell +q+ e++++e +++e+
  Zpz_sc02666.1.g00120.1.sm.mk  85 QQKIIREMTRMKDERNRLRIIMGQYMSDDLALLSLQDVTNLEQQLEFSLYKVRLRKQELLDQQLLEMRHREMRVSED 161
                                   577889*****************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.048161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-29278IPR002100Transcription factor, MADS-box
CDDcd002655.19E-38275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1282160IPR002487Transcription factor, K-box
PROSITE profilePS5129710.62985176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRGKVELKK IENPSSRQVT FSKRRMGLLK KANELAILCD AQIGVIIFSD SGKMYEYSSP  60
PWRIANIFDR YLKAPCTRFD EMDIQQKIIR EMTRMKDERN RLRIIMGQYM SDDLALLSLQ  120
DVTNLEQQLE FSLYKVRLRK QELLDQQLLE MRHREMRVSE DLCLMVRRTV PAFFSSGRLI  180
LCVLVSASCP DELALCTVPL GQQTQSADEM VANPTNKPFP WWDDAGSSQQ LYGHHDAEPS  240
TMTALQLLPQ LGEYNKLQPL QPNLQDAAGL QSFILRLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-16160160MEF2 CHIMERA
6byy_B6e-16160160MEF2 CHIMERA
6byy_C6e-16160160MEF2 CHIMERA
6byy_D6e-16160160MEF2 CHIMERA
6bz1_A6e-16160160MEF2 CHIMERA
6bz1_B6e-16160160MEF2 CHIMERA
6bz1_C6e-16160160MEF2 CHIMERA
6bz1_D6e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02666.1.g00120.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976800.11e-112MADS-box transcription factor 31-like
SwissprotQ84NC24e-87MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A368S0K61e-111A0A368S0K6_SETIT; Uncharacterized protein
STRINGPavir.Gb00526.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]