PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02658.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 226aa MW: 24005.2 Da PI: 9.4706

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02658.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F ++ L H +H Zpz_sc02658.1.g00020.1.am.mk 44 FRCSVCGKAFASHQALGGHKASH 66 89************999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.9E-5	41	66	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.16E-8	42	66	No hit	No description
Pfam	PF13912	4.5E-11	43	68	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.013	44	66	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.928	44	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.16E-8	95	122	No hit	No description
Pfam	PF13912	5.2E-11	99	123	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.98	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.307	100	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MAMNHDDYVS LCLMALAAAA GEGRVLGTRQ VWTAQPPQEC ERRFRCSVCG KAFASHQALG 60 GHKASHRQPT AVPPQVQASS CGDAAAASSV TTSEGGQGRH RCSVCHRRFS TGQALGGHKR 120 CHYWDGLSVS LTASGSGSSS LKELDLNLMP TPERSAGARG WGEEEEVQSP LPVKKRRLSG 180 PSGAKYGVRP IEPHRGALPA PPPWTSDTRR MTLLPTLLMT IVAVGT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269\|PubMed:25071223}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02658.1.g00020.1.am.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269\|PubMed:25071223}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968731	3e-36	EU968731.1 Zea mays clone 323782 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182764.1	3e-68	zinc finger protein ZAT6-like
Swissprot	Q75KE5	3e-45	ZFP36_ORYSJ; Zinc finger protein 36
TrEMBL	W5C354	3e-67	W5C354_WHEAT; Uncharacterized protein
STRING	Traes_2DS_11ADF414D.1	6e-68	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3412	32	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04340.1	6e-28	zinc finger of Arabidopsis thaliana 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang H, et al. A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice. J. Exp. Bot., 2014. 65(20): p. 5795-809 [PMID:25071223] Li W, et al. A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance. Cell, 2017. 170(1): p. 114-126.e15 [PMID:28666113]