PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02615.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 861aa MW: 93682.7 Da PI: 9.647

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02615.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.1	3.5e-11	245	280	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+ Zpz_sc02615.1.g00020.1.am.mk 245 RWPRDETLALIRIRSEMDATFRDATLKGPLWEDVSR 280 8*********************************97 PP
2	trihelix	73.7	3.1e-23	281	353	13	87
trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f++lea Zpz_sc02615.1.g00020.1.am.mk 281 IRSEMDATFRDATLKGPLWEDVSRKLADLGYNRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRFFSELEA 353 8*******************************************************866665..****985 PP
3	trihelix	104.7	6.7e-33	638	723	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r +me r++++ k+p We++s mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpy Zpz_sc02615.1.g00020.1.am.mk 638 RWPKTEVHALIQLRMDMEMRYQETGPKGPMWEDISVGMRRMGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPY 717 8*******************************************************************8.99*** PP trihelix 82 fdqlea 87 f+qlea Zpz_sc02615.1.g00020.1.am.mk 718 FHQLEA 723 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0026	242	328	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.889	244	326	IPR017877	Myb-like domain
CDD	cd12203	3.80E-26	245	333	No hit	No description
Pfam	PF13837	1.0E-15	281	354	No hit	No description
SMART	SM00717	0.2	635	697	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.027	637	695	IPR017877	Myb-like domain
CDD	cd12203	4.61E-30	637	702	No hit	No description
Pfam	PF13837	1.4E-22	637	724	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MMNLAPHAGT YAFLHPAPQL PTREVTHAAV TWCIAAGRRA DRERGRVLPF PHTRAEHRGV 60 FACFFPPFSR LGPFLVVLFS PSVAPLSTAS PPRRALRSLY QPFFSNFILS LQFPFPNPLS 120 LSLFADTTLA RCRARRGGEG ELLQSSGEEG ELVVVPGAAV VAPMQQHQGD GSPYGAQPPP 180 DTGPFSQPAA SSAKPLSSRP PSSQQLRPSY KELAGMSGTS GAGGGFRDDE MLGGGNGSGA 240 SGGNRWPRDE TLALIRIRSE MDATFRDATL KGPLWEDVSR IRSEMDATFR DATLKGPLWE 300 DVSRKLADLG YNRSAKKCKE KFENVHKYYK RTKDGRAGRQ DGKSYRFFSE LEALHAAGAG 360 AAPQPSASSA PQLHALAAPE SEPPQTNSMP PPAGPMQLAP ISSVAPVPAP LELPPQQPLN 420 LQGLRFSSMS DSESDGESDD DDDMPEEMGG GQDQLVKRKR GGGGSKKLMS FFEGLLQHVT 480 ERQEEMQRRL LETMEQREEA WRRQEVALLN REQEQLAQER AAAASRDAAI IAFLQRIGGH 540 SVQPSTAVVV AAQKHVQTPP PLPKQTPHQQ PKPISASPLQ QQPPQQQYQE MSPQNASTPR 600 GAPPIPAFGA STLELAPSSE HHVDSGIGGE GGAASSSRWP KTEVHALIQL RMDMEMRYQE 660 TGPKGPMWED ISVGMRRMGY NRSSKRCKEK WENINKYYKK VKESNKKRPE DSKTCPYFHQ 720 LEAIYRMKQQ GGGTAAAAAP VFPDQLNQSR HEIEGKNIND DKRNNGGSGG GTQLVTASNG 780 EIEKIQLQGS RVLTKPKSLP RSAHLDLDPE LVLRAPGTKL LASDLLASPT AVTAGTRARR 840 CVGAATRPGL LTHLIVPTTR H

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MMNLAPHAGT YAFLHPAPQL PTREVTHAAV TWCIAAGRRA DRERGRVLPF PHTRAEHRGV  60
FACFFPPFSR LGPFLVVLFS PSVAPLSTAS PPRRALRSLY QPFFSNFILS LQFPFPNPLS  120
LSLFADTTLA RCRARRGGEG ELLQSSGEEG ELVVVPGAAV VAPMQQHQGD GSPYGAQPPP  180
DTGPFSQPAA SSAKPLSSRP PSSQQLRPSY KELAGMSGTS GAGGGFRDDE MLGGGNGSGA  240
SGGNRWPRDE TLALIRIRSE MDATFRDATL KGPLWEDVSR IRSEMDATFR DATLKGPLWE  300
DVSRKLADLG YNRSAKKCKE KFENVHKYYK RTKDGRAGRQ DGKSYRFFSE LEALHAAGAG  360
AAPQPSASSA PQLHALAAPE SEPPQTNSMP PPAGPMQLAP ISSVAPVPAP LELPPQQPLN  420
LQGLRFSSMS DSESDGESDD DDDMPEEMGG GQDQLVKRKR GGGGSKKLMS FFEGLLQHVT  480
ERQEEMQRRL LETMEQREEA WRRQEVALLN REQEQLAQER AAAASRDAAI IAFLQRIGGH  540
SVQPSTAVVV AAQKHVQTPP PLPKQTPHQQ PKPISASPLQ QQPPQQQYQE MSPQNASTPR  600
GAPPIPAFGA STLELAPSSE HHVDSGIGGE GGAASSSRWP KTEVHALIQL RMDMEMRYQE  660
TGPKGPMWED ISVGMRRMGY NRSSKRCKEK WENINKYYKK VKESNKKRPE DSKTCPYFHQ  720
LEAIYRMKQQ GGGTAAAAAP VFPDQLNQSR HEIEGKNIND DKRNNGGSGG GTQLVTASNG  780
EIEKIQLQGS RVLTKPKSLP RSAHLDLDPE LVLRAPGTKL LASDLLASPT AVTAGTRARR  840
CVGAATRPGL LTHLIVPTTR H

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02615.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956843	3e-95	EU956843.1 Zea mays clone 1575747 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146293.2	0.0	uncharacterized LOC100279868 isoform 1
TrEMBL	A0A1D6E4F1	0.0	A0A1D6E4F1_MAIZE; GT-2-like 1
STRING	GRMZM2G016649_P03	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-35	Trihelix family protein