PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02574.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 664aa    MW: 72227.3 Da    PI: 6.8067
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02574.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07245286338
                      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                                   +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  Zpz_sc02574.1.g00030.1.am.mk 245 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 286
                                   578*****************************6567777776 PP
2CCT67.73.1e-23609652144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Zpz_sc02574.1.g00030.1.am.mk 609 REARVSRYREKRLTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 652
                                   9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-11243290IPR000315B-box-type zinc finger
PROSITE profilePS5011910.48243290IPR000315B-box-type zinc finger
PfamPF006432.2E-6246287IPR000315B-box-type zinc finger
CDDcd000213.36E-8246290No hitNo description
PROSITE profilePS5101715.696609651IPR010402CCT domain
PfamPF062038.6E-18609651IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MGGSCPGERK YQRSVTKDTG SIEPIDSKQQ GWEHADHAPF SLVLDHAGSG PRPRVPVYCD  60
GIVASNYACA PIDGDPGSVT RAVVLLHKRH DCLRAHARQL PAPSHHQFAQ FHHASGDSAT  120
MQGDLPHPLI TAAAIMSFIV DKTTTTMDGR EPQWRNERKF LVLPGRTKAA HSNRDRGRER  180
RRKGSGCRLA QWSGPPEIPS QPMAGALAGW SVHETSPASK IVAPRRQEMI TTSSSAMAAV  240
GSKAARACDG CLRRRARWYC AADDAFLCQG CDTSVHSANP LARRHERLRL QQSSLPMQSP  300
PAAGGAAKQC ERRDEVVPAW FRRKARTPRG GQAVAKRLIV PEAAGGGNSS EGRSCVGEVE  360
AEEQLLYRVP VFDPALAEFC LPPPLEDTAA AASSCCNADG DVVNSTKPDA APPPQPPPTT  420
QFFPHRCAGF EPTDAELREF AADMEALLGR GLDDGNEEDP FYMETLGLLD PVVDDGARVK  480
VENEVGGAYE AIDELACRLD VEPEASDEML DIDFDYGSPQ ETPEEKAASS DGTGSDAMFL  540
QRSLCLTLNY EAIIESWESS PWTGGGCRPH VKLDDCWLHD YSGMWVMGGV VGHGGEEMSL  600
PRLGMDGGRE ARVSRYREKR LTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RATAGGSVTI  660
AGLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02574.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965182.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A0A9S1W60.0A0A0A9S1W6_ARUDO; Uncharacterized protein
STRINGSi006432m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-72B-box type zinc finger protein with CCT domain