PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc02573.1.g00060.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 87aa MW: 8908.89 Da PI: 10.7771

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02573.1.g00060.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	41.3	5e-13	2	24	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh hAlrR+RgsgGrF Zpz_sc02573.1.g00060.1.sm.mk 2 QPYLHESRHLHALRRARGSGGRF 24 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	19.471	1	27	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.5E-10	2	24	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MQPYLHESRH LHALRRARGS GGRFLNTRNV DAVPGGGGQA PPSADAFTGF GVGDAPESTA 60 RSAMRDSVAV SGVVSAAEGG RCGALRF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02573.1.g00060.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27498	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	1e-12	nuclear factor Y, subunit A10