PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02539.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 1042aa MW: 114747 Da PI: 7.7142

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02539.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65	1.6e-20	481	577	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++ + +kk++W+ vs +m +rgf +sp+qC++k+++lnkryk+++e+ + Zpz_sc02539.1.g00030.1.am.mk 481 KWTSNMVKLLVSAVSYIDEDVEVDHgsgsgrrkhamlKKKGKWKLVSMAMNKRGFAVSPQQCEDKFNDLNKRYKRLTEILG 561 7************9999999764456677889999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zpz_sc02539.1.g00030.1.am.mk 562 RGrACEIVEKPALLEK 577 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-19	479	604	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1042 aa Download sequence Send to blast
MHQRRTAKSR FGKEKQKGIV KKPAIGDWAA GGGGTDWDRG AWEHIRTGCE LRGRDCARIP 60 RVRSECGRSW SGCERCGTAQ TGTADPGRRA DGPDTQLVHM AYSRGLRRVR LNDLDGPLSG 120 HTGLLFIGRR RRNQSLARSV RRAVLWLRLA AASKTTPHYY NYQNKQSRNQ WDHLRAARFD 180 GSQAKSAARQ PPLVISRRRQ RSPPSAVAVA TARPILTCER GPPPAGRART CAYVSCVAHT 240 LLTPLCAQML RTEPPRPHAI ANLALLLPPL ALASIPSRLA EVPPFRSITL STGACISSEV 300 LFLGMVMTPA RFSLLVDSVS FAVENGGFRS CRAAAADCQR QQQSTFFQTK AVIFGCFRPS 360 GQKSRPETPQ NVQRLSGEKL GDWGGLLRPR GGCLSPEMKG DLPPRALIPG SPFDLEPSMQ 420 QQQQLHFAQP HVHQGVFAVR ANPVQELGNV VKTSLSDEED ADDGHHDHGK AAAASQWHRV 480 KWTSNMVKLL VSAVSYIDED VEVDHGSGSG RRKHAMLKKK GKWKLVSMAM NKRGFAVSPQ 540 QCEDKFNDLN KRYKRLTEIL GRGRACEIVE KPALLEKISL SAKLKEEAKK HLNSKHLHYE 600 EMCSYHNRNR FCLLDDPALQ KSLRMALRSG DEQGRKNSFG YEDEDDHALF SDEDDEDDEC 660 NDYLEVSAED RHHRVHSTKK LKHDHEETHC GSHLSEVAAF DMNKMLSEGS GGAASEKNRS 720 GMHSNQIEQE RLKIKSQMLK IEQRHLKWLR FSKEKDRELE KMRLENEKMA LENERMELEL 780 KLKEIEMEFS ERCLVSQVRS QMKLRILPCR CPAGDAISGI QQHGVLWDTQ RSFDSRCLFL 840 QRLGNVDTSC LQAPAMGACA TKSGDLKNVK GEPPLVVEDA MAPRVAEGEK AKADGVPVAA 900 ETTDPADVSR RRSLSDLLKE DAEASDEEAG QDAVKVVAED SVVATDVEAG APESVSEEAE 960 AAKAPPVAVQ PSDAVVEQDA AAEQPTDGSR TGQEPSGEAQ EAEEEKRVDP DSVQVASAAD 1020 AADATVAAPS TEGGEVADGA SA

Sequence ? help Back to Top

Protein Sequence Length: 1042 aa Download sequence Send to blast

MHQRRTAKSR FGKEKQKGIV KKPAIGDWAA GGGGTDWDRG AWEHIRTGCE LRGRDCARIP  60
RVRSECGRSW SGCERCGTAQ TGTADPGRRA DGPDTQLVHM AYSRGLRRVR LNDLDGPLSG  120
HTGLLFIGRR RRNQSLARSV RRAVLWLRLA AASKTTPHYY NYQNKQSRNQ WDHLRAARFD  180
GSQAKSAARQ PPLVISRRRQ RSPPSAVAVA TARPILTCER GPPPAGRART CAYVSCVAHT  240
LLTPLCAQML RTEPPRPHAI ANLALLLPPL ALASIPSRLA EVPPFRSITL STGACISSEV  300
LFLGMVMTPA RFSLLVDSVS FAVENGGFRS CRAAAADCQR QQQSTFFQTK AVIFGCFRPS  360
GQKSRPETPQ NVQRLSGEKL GDWGGLLRPR GGCLSPEMKG DLPPRALIPG SPFDLEPSMQ  420
QQQQLHFAQP HVHQGVFAVR ANPVQELGNV VKTSLSDEED ADDGHHDHGK AAAASQWHRV  480
KWTSNMVKLL VSAVSYIDED VEVDHGSGSG RRKHAMLKKK GKWKLVSMAM NKRGFAVSPQ  540
QCEDKFNDLN KRYKRLTEIL GRGRACEIVE KPALLEKISL SAKLKEEAKK HLNSKHLHYE  600
EMCSYHNRNR FCLLDDPALQ KSLRMALRSG DEQGRKNSFG YEDEDDHALF SDEDDEDDEC  660
NDYLEVSAED RHHRVHSTKK LKHDHEETHC GSHLSEVAAF DMNKMLSEGS GGAASEKNRS  720
GMHSNQIEQE RLKIKSQMLK IEQRHLKWLR FSKEKDRELE KMRLENEKMA LENERMELEL  780
KLKEIEMEFS ERCLVSQVRS QMKLRILPCR CPAGDAISGI QQHGVLWDTQ RSFDSRCLFL  840
QRLGNVDTSC LQAPAMGACA TKSGDLKNVK GEPPLVVEDA MAPRVAEGEK AKADGVPVAA  900
ETTDPADVSR RRSLSDLLKE DAEASDEEAG QDAVKVVAED SVVATDVEAG APESVSEEAE  960
AAKAPPVAVQ PSDAVVEQDA AAEQPTDGSR TGQEPSGEAQ EAEEEKRVDP DSVQVASAAD  1020
AADATVAAPS TEGGEVADGA SA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02539.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-63	sequence-specific DNA binding transcription factors