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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zpz_sc02491.1.g00020.1.sm.mk |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
Trihelix |
Protein Properties |
Length: 302aa MW: 32956.9 Da PI: 8.8361 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zpz_sc02491.1.g00020.1.sm.mk | genome | ZGD | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 79.9 | 3.7e-25 | 24 | 110 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
rWt++e+l+Li+arr me+r + + + p+W++vs+++r++g+er+p qC+++w nl+++ k+i ++e+k +++++ ++
Zpz_sc02491.1.g00020.1.sm.mk 24 RWTRHETLVLIQARRAMERRGLQqTVRPRPKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKRIVAWEGKAAAGAVPQHE 104
8*****************9987615688********************************************999999999 PP
trihelix 81 yfdqle 86
f +++
Zpz_sc02491.1.g00020.1.sm.mk 105 SFWDMR 110
999995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MSTNEKSPPA EAAAASTPRS RLPRWTRHET LVLIQARRAM ERRGLQQTVR PRPKWAAVSA 60 YCRRHGVERG PMQCRKRWGN LSWDLKRIVA WEGKAAAGAV PQHESFWDMR GEERRARQLP 120 SSFDREVYNA IVAGTAAVVE DAAAAVLPDF GEEMDGAYEQ PPIMVVPISA RRYEPPPASS 180 EHECSNPVDT HFGATTAATE SEKKKVGGAA SDKNSTSQQD AGGGPKDSDA TFVAGAEDTG 240 TPAATVSIGK QVIEALERGN RALMQHLEVQ RTNRDADRQQ RTALLVALDR LGDAVARIAD 300 KL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728031 | 1e-127 | KJ728031.1 Zea mays clone pUT6171 trihelix transcription factor (THX11) mRNA, complete cds. |