PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02487.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GeBP | ||||||||
Protein Properties | Length: 238aa MW: 25944.7 Da PI: 4.1619 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 40.4 | 8.4e-13 | 152 | 238 | 3 | 95 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 fqr ws++De+ +L l + ++g+ p++ d++a + ++++ +ql+ K+++L+ + + vkk g+ sk Zpz_sc02487.1.g00010.1.am.mk 152 FQRSWSKDDEVRILETLAAHRREHGTLPHHkDLEAALA--GSLDNSDYRGNQLLGKVKSLRSVYSRTVKK---GEL--PSK 225 9************************9776657777543..3344689**********************9...544..579 PP DUF573 83 ehdqkifelskki 95 +hd+ if+lsk + Zpz_sc02487.1.g00010.1.am.mk 226 DHDRRIFNLSKEV 238 9*********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-17 | 152 | 238 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAPKRPAPPP PPVESSEETD SGSGSEESEE EIALSPPTAT APKNTVRPPP QPEASDESSS 60 EEEDESGEED EEEEEEALKS NYTVPPTANP NPPPPPPTQE ESESDEEGEE SESEEEANDD 120 APQKESASKL AAEANGEKLP PSSGDNKRGG FFQRSWSKDD EVRILETLAA HRREHGTLPH 180 HKDLEAALAG SLDNSDYRGN QLLGKVKSLR SVYSRTVKKG ELPSKDHDRR IFNLSKEV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02487.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456145.2 | 4e-33 | nucleolin | ||||
TrEMBL | A0A3L6QKU3 | 2e-42 | A0A3L6QKU3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa00346.1.p | 2e-41 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 3e-08 | DNA-binding storekeeper protein-related transcriptional regulator |