PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02471.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 704aa MW: 73561.7 Da PI: 9.4636

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02471.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	303.5	5.1e-93	336	703	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaa 80 ++lL ++A av++g+++ a a La l+ a+p+gd+ qRl+a++t AL++r+ p+s+ + e+ aa Zpz_sc02471.1.g00090.1.am.mk 336 RQLLSDAAAAVADGNQTVAAAHLAVLKISANPRGDAEQRLVAMMTGALSSRVGP---------PSSQHLV-DlcGGEQRAA 406 6899***********************************************9.........2222222.2236667789 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........ 153 +l+++vsP++ ++ aN aIl+av+ ++++H++Dfdis +Q +aL+qaL +R++ sl+iT+v++p+s Zpz_sc02471.1.g00090.1.am.mk 407 CQLLHDVSPCFGLALHGANLAILDAVADHRAIHVVDFDISI-AQHIALIQALGNRRAAGTSLKITAVADPTSPftspftpa 486 9**********************************97.79*********************998889999999 PP GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 +++l +t erL++ A++ gv+f+f++ v+ + +++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+sl Zpz_sc02471.1.g00090.1.am.mk 487 LAQALASTTERLKRHAQQAGVEFRFKA-VSCSAAEIEASRLGCQPGEALAVNLAFILSRVPDESVSPANPRDELLRRVRSL 566 999********************.6889999****************************************** PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 P+vv++veqe+++n++++++rf++a+ +y a+++sl+a+l r+s +r+ E++ l+ +++n+va ega+r+er+e ++kW Zpz_sc02471.1.g00090.1.am.mk 567 GPRVVTLVEQELNTNTAPLAARFADACAHYGAVLESLDATLCRDSAQRARAEAA-LASKVCNAVAREGADRVERCEVFGKW 646 *************************************************9.9********************* PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r+r+++aG++pv++++ +a+ +k+ l g+ v+ ++g l gW++r ++++SaW Zpz_sc02471.1.g00090.1.am.mk 647 RARFGMAGLRPVAIGQGVADRVKARLGPAR-PGFDVKLDNGRLGVGWMGRVVTVASAW 703 ***********************999.9************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.847	309	685	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-90	336	703	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MLSSPAPIPP IGQILPAAVV ALRRQRHCCR TGVLASDPKQ SQERAIRPTL LSFSSRSTLL 60 FVPPPLSAAS APGFSGMEPA GWCDPRRRAY GYGYGVGSAV DAPPMIRQQQ HPPAAPRPDA 120 AAGATGSVLK RSLSEMERWQ QALCLRAVKQ RTAAPVPPGH HQLDIGAVLA GAASARARGL 180 SGQPSAGFAW PSPQPSSTLS SLTTASPMQP LWQRQVMAAP SAPVAKGAAA TARPTTAREM 240 VLLRELEKQL LGDDEEVEAE AAGSVCGSAV TNSGWGETIH ELNSIAATPL PSHPKTMTAT 300 NRYNTVPMSR SPSNSTSSAT SSTASSSPPT SAASSRQLLS DAAAAVADGN QTVAAAHLAV 360 LKISANPRGD AEQRLVAMMT GALSSRVGPP SSQHLVDLCG GEQRAACQLL HDVSPCFGLA 420 LHGANLAILD AVADHRAIHV VDFDISIAQH IALIQALGNR RAAGTSLKIT AVADPTSPFT 480 SPFTPALAQA LASTTERLKR HAQQAGVEFR FKAVSCSAAE IEASRLGCQP GEALAVNLAF 540 ILSRVPDESV SPANPRDELL RRVRSLGPRV VTLVEQELNT NTAPLAARFA DACAHYGAVL 600 ESLDATLCRD SAQRARAEAA LASKVCNAVA REGADRVERC EVFGKWRARF GMAGLRPVAI 660 GQGVADRVKA RLGPARPGFD VKLDNGRLGV GWMGRVVTVA SAWC

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MLSSPAPIPP IGQILPAAVV ALRRQRHCCR TGVLASDPKQ SQERAIRPTL LSFSSRSTLL  60
FVPPPLSAAS APGFSGMEPA GWCDPRRRAY GYGYGVGSAV DAPPMIRQQQ HPPAAPRPDA  120
AAGATGSVLK RSLSEMERWQ QALCLRAVKQ RTAAPVPPGH HQLDIGAVLA GAASARARGL  180
SGQPSAGFAW PSPQPSSTLS SLTTASPMQP LWQRQVMAAP SAPVAKGAAA TARPTTAREM  240
VLLRELEKQL LGDDEEVEAE AAGSVCGSAV TNSGWGETIH ELNSIAATPL PSHPKTMTAT  300
NRYNTVPMSR SPSNSTSSAT SSTASSSPPT SAASSRQLLS DAAAAVADGN QTVAAAHLAV  360
LKISANPRGD AEQRLVAMMT GALSSRVGPP SSQHLVDLCG GEQRAACQLL HDVSPCFGLA  420
LHGANLAILD AVADHRAIHV VDFDISIAQH IALIQALGNR RAAGTSLKIT AVADPTSPFT  480
SPFTPALAQA LASTTERLKR HAQQAGVEFR FKAVSCSAAE IEASRLGCQP GEALAVNLAF  540
ILSRVPDESV SPANPRDELL RRVRSLGPRV VTLVEQELNT NTAPLAARFA DACAHYGAVL  600
ESLDATLCRD SAQRARAEAA LASKVCNAVA REGADRVERC EVFGKWRARF GMAGLRPVAI  660
GQGVADRVKA RLGPARPGFD VKLDNGRLGV GWMGRVVTVA SAWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-39	331	703	1	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02471.1.g00090.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812574.1	0.0	scarecrow-like protein 8
TrEMBL	A0A0A9FCJ7	0.0	A0A0A9FCJ7_ARUDO; Uncharacterized protein
STRING	Pavir.Aa00944.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	2e-88	SCARECROW-like 8