PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02445.1.g00060.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 444aa MW: 48789.4 Da PI: 9.5906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02445.1.g00060.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.5	2.3e-19	53	120	2	69
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 CaaC +lr kC+++Cv+apyf +e+ ++fa+++ FGasnv+k++++ ++ er a++ l+y A ra Zpz_sc02445.1.g00060.1.sm.mk 53 CAACTHLRLKCEPGCVFAPYFGSEDGEQFAVLEGAFGASNVSKVVAEHEPGERAVAIKRLLYLATERA 120 ****************************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.885	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-17	53	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MDPKVPNCSR PCGAATDPSS PLSPSPSPSS TIAGVSSDAV VASSSEGERE KVCAACTHLR 60 LKCEPGCVFA PYFGSEDGEQ FAVLEGAFGA SNVSKVVAEH EPGERAVAIK RLLYLATERA 120 WGSSVPRGHA EKLPIQRARQ LTAAQQAAAT AQASREQALM MQYHAGTGFG VPVAHLPSYH 180 YQAMIARRHD MMMRQAAAAQ NYQAFGLEQQ RQGAAAKRKS MPQPVAELQQ RRAAANEVLM 240 MQYHAGKEFG VPAGRLPSHQ ATEIERQQTA AAAVARHRDM KMRQAAVAMV YQALGLQRPR 300 QNQQLAEDVT HQNRHTALTA EAAKRSTAAD AAMVREIDKI LQFLRQAAVE EQYMNRCLSI 360 MMQQTVVDGQ QEHHHLGQDR AGKNAVIRRN IMKGIANRQY IDQNIKRVQQ YWEKELMMMM 420 EKAAANAPAM PGEQPQPQRQ TGNH

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MDPKVPNCSR PCGAATDPSS PLSPSPSPSS TIAGVSSDAV VASSSEGERE KVCAACTHLR  60
LKCEPGCVFA PYFGSEDGEQ FAVLEGAFGA SNVSKVVAEH EPGERAVAIK RLLYLATERA  120
WGSSVPRGHA EKLPIQRARQ LTAAQQAAAT AQASREQALM MQYHAGTGFG VPVAHLPSYH  180
YQAMIARRHD MMMRQAAAAQ NYQAFGLEQQ RQGAAAKRKS MPQPVAELQQ RRAAANEVLM  240
MQYHAGKEFG VPAGRLPSHQ ATEIERQQTA AAAVARHRDM KMRQAAVAMV YQALGLQRPR  300
QNQQLAEDVT HQNRHTALTA EAAKRSTAAD AAMVREIDKI LQFLRQAAVE EQYMNRCLSI  360
MMQQTVVDGQ QEHHHLGQDR AGKNAVIRRN IMKGIANRQY IDQNIKRVQQ YWEKELMMMM  420
EKAAANAPAM PGEQPQPQRQ TGNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-14	53	119	12	78	LOB family transfactor Ramosa2.1
5ly0_B	4e-14	53	119	12	78	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02445.1.g00060.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36281	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	8e-16	LBD family protein