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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02399.1.g00100.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GeBP | ||||||||
Protein Properties | Length: 261aa MW: 28361.7 Da PI: 6.7359 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 54.5 | 3.3e-17 | 50 | 138 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 +q+lws+ De++lL G fk + g+ p d+ ++yef+k+sis + k + K++rLK Kf++ + s+ Zpz_sc02399.1.g00100.1.sm.mk 50 AQKLWSDADEVALLTGAAAFKGRSGVAPRLpDMGELYEFLKDSISPHLDKAKVYYKLKRLKSKFQHSAPG-------ASST 123 79************************98877**********************************99888.......7899 PP DUF573 83 ehdqkifelskkiWg 97 +hd+ + +ls +Wg Zpz_sc02399.1.g00100.1.sm.mk 124 PHDRLVRDLSADLWG 138 999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-16 | 51 | 138 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
SRRRAPAGLG AASRKSDRKR KPRAFPDSTT LAAVAAVAAA PSASSSRGAA QKLWSDADEV 60 ALLTGAAAFK GRSGVAPRLP DMGELYEFLK DSISPHLDKA KVYYKLKRLK SKFQHSAPGA 120 SSTPHDRLVR DLSADLWGAE LAHQVEEGER PEEDGADDEE AEGVNAIQVH TGGDSEGPQP 180 ERLPIVREVL GEHWRLNRQA LSGVSLEKGL LQVAPEKADA AEAKWRQQLE ADMHMQMRWH 240 DLGKEAGQPN LPFIADADRQ T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 20 | RRRAPAGLGAASRKSDRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02399.1.g00100.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436676.2 | 2e-81 | STOREKEEPER protein | ||||
TrEMBL | A0A0A9S6C6 | 5e-86 | A0A0A9S6C6_ARUDO; Uncharacterized protein | ||||
STRING | Si006601m | 5e-78 | (Setaria italica) | ||||
STRING | GRMZM2G008558_P02 | 1e-78 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 3e-09 | DNA-binding storekeeper protein-related transcriptional regulator |