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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02366.1.g00080.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 401aa MW: 43737.9 Da PI: 6.3308 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.5e-11 | 180 | 237 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-.STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..kapskK.lsKaeiLekAveYIksLq 55 +rr+h ++Er+RR+++N+ + Lr+l+P ++ +a+ + + a+i A+e I++L+ Zpz_sc02366.1.g00080.1.sm.mk 180 QRRTHIAVERNRRRQMNEYLRILRSLMPGSYvqRARPGIvGDQASIIGGAIELIRELE 237 79***************************666977777889**************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.23E-10 | 178 | 241 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-12 | 178 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-12 | 179 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.322 | 179 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-9 | 180 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-5 | 185 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00445 | 340 | 398 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSAIKRMDKQ KATTTHSHLD SFAPEEEHSA ESGGGAEMVD YMLSQADHPA SQPTEGQSHQ 60 QVSFDKLRFS DVLEFADFGP KLAINQVDGG EDNDGYLFRF QPLPSHPEAP PRGDAAGQQH 120 HHVEQQEGSK KTADGGVSDS TTLVELADGG GREEKGGGQG KSGRRKRPRT VKTSEEVESQ 180 RRTHIAVERN RRRQMNEYLR ILRSLMPGSY VQRARPGIVG DQASIIGGAI ELIRELEHLI 240 QCLDSQKRRR LYGGSDDAPR LVVDPAGAGA PASILQHQPQ PPPPPSFFPP SLPFPTASGG 300 SGSDVQILDL DVAEGLREAV AENKSCLADI EVRAVGADAM IKILSRRRPG QLIRTIAALE 360 EMQMSILHTN ITTIEQTVLY SFNVKGKITG KEESEQYAVK C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 157 | GGREEKGGG |
2 | 246 | 250 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02366.1.g00080.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805324.1 | 1e-157 | transcription factor FAMA isoform X1 | ||||
Swissprot | Q56YJ8 | 4e-90 | FAMA_ARATH; Transcription factor FAMA | ||||
TrEMBL | A0A0A9GYP1 | 1e-164 | A0A0A9GYP1_ARUDO; FMA | ||||
STRING | Pavir.J04021.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9502 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 1e-84 | bHLH family protein |