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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zpz_sc02354.1.g00040.1.am.mkhc |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
Whirly |
| Protein Properties |
Length: 192aa MW: 21435.5 Da PI: 9.9727 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc02354.1.g00040.1.am.mkhc | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 166.1 | 8.9e-52 | 31 | 154 | 16 | 139 |
Whirly 16 ptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94
+ ++a+ sg ++++r+G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+sneG+v+k+l
Zpz_sc02354.1.g00040.1.am.mkhc 31 AYLSAIHSGGFRVSRNGSVMLTFFPAIGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSNEGQVKKSL 109
56899************************************************************************** PP
Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
++ Pl + sG+fvnl+v n+l+k+ +++svP++k+efa+lr++l+
Zpz_sc02354.1.g00040.1.am.mkhc 110 SLTPLGNDSGYFVNLTVLNNLQKTTDRVSVPITKGEFAALRTALS 154
******************************************985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005739 | Cellular Component | mitochondrion |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MKIKRGFRCS SEGCSAAERW TRRWACPFLL AYLSAIHSGG FRVSRNGSVM LTFFPAIGQR 60
KYDYSKKQLF ALSPTEVGSL ISLGPAESCE FFHDPSMKSS NEGQVKKSLS LTPLGNDSGY 120
FVNLTVLNNL QKTTDRVSVP ITKGEFAALR TALSFALPHI MGWDQVLTNH HPAPQGSKPR 180
MERPHPDSEW ER
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 8e-60 | 29 | 170 | 29 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 8e-60 | 29 | 170 | 29 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 8e-60 | 29 | 170 | 29 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 8e-60 | 29 | 170 | 29 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
