PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02344.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 697aa    MW: 74730.8 Da    PI: 7.1291
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02344.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.71e-3065149187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW++qe+laL+++r+em+ ++r+++lk+plWe+vs+k+++ g++rspk+C+ek+en+ k+yk++k+g+ +r++++   +++
  Zpz_sc02344.1.g00110.1.am.mk  65 RWPRQETLALLKIRSEMDAAFREAALKGPLWEQVSRKLAAMGYNRSPKKCREKFENVDKYYKRTKDGRAGRSDGKA--YRF 143
                                   8*********************************************************************966665..*** PP

                      trihelix  82 fdqlea 87 
                                   f++lea
  Zpz_sc02344.1.g00110.1.am.mk 144 FSELEA 149
                                   ***985 PP
2trihelix105.24.5e-33436521187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++r +k+Ckekwen+nk++kk+k+++k+r +e+s+tcpy
  Zpz_sc02344.1.g00110.1.am.mk 436 RWPKAEVHALIQLRTELEARYQDNGPKGPLWEDISAGMRRLGYNRRAKRCKEKWENINKYFKKVKDSNKRR-PEDSKTCPY 515
                                   8********************************************************************97.99******* PP

                      trihelix  82 fdqlea 87 
                                   ++ql+a
  Zpz_sc02344.1.g00110.1.am.mk 516 YNQLDA 521
                                   ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.21358122IPR017877Myb-like domain
SMARTSM007170.001362124IPR001005SANT/Myb domain
CDDcd122031.20E-2864129No hitNo description
PfamPF138375.2E-2164150No hitNo description
SMARTSM007170.036433495IPR001005SANT/Myb domain
PROSITE profilePS500906.899435493IPR017877Myb-like domain
CDDcd122039.38E-31435500No hitNo description
PfamPF138374.8E-23436522No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MQQQPGMPSF SPTAGAGTTA SQHAQPSEPS GAGGSAPPPA GSSIDHEGLS AGGDEGDRSG  60
SAGNRWPRQE TLALLKIRSE MDAAFREAAL KGPLWEQVSR KLAAMGYNRS PKKCREKFEN  120
VDKYYKRTKD GRAGRSDGKA YRFFSELEAL HGASSPHPPP ASLAPNPAAM APPAAFPLGV  180
VPSMAAPAMH RAEPPPPSSV VTMTPAAPTA GGVTCMMTAG DVSFSSSSDG EDTNQETGDG  240
GKRKRRDSDG GGGSSKMMRF FEGLMRQVME RQEEMQQRFI EAIERREQDR MIRDEAWRRQ  300
EVARLAREQD ALAQERAMAA SRDAAVVAFI QRITGQTIPM PPPSSLGVSP PTMISQALKP  360
TPVASAAPAP PPQHQHHQTP SPVQPAPKTH TTVPPISTQP QKQHMPQPES KDSIVVRAPA  420
ESQDTMGSGG APSPSRWPKA EVHALIQLRT ELEARYQDNG PKGPLWEDIS AGMRRLGYNR  480
RAKRCKEKWE NINKYFKKVK DSNKRRPEDS KTCPYYNQLD ALYRSKALAS SGAGGAAPHP  540
RPESVTTAPH QADCSSVRNG NGCASSDTGG GMQTQGSNGG GSGNGTSTKK EDNIMMKETP  600
QPVSMNDSYV NDRMDAGDSD SMDDDEDDFD EDEDEGDVGS GGNNNKTMLY EIQFQRQHQH  660
QSQSQGSVDI RPNASGGAGS GPGPATTSGS FLTMVHH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02344.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418001e-99AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791925.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2T7CIN40.0A0A2T7CIN4_9POAL; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-48Trihelix family protein