PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02328.1.g00030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 498aa MW: 54970 Da PI: 10.2323 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 176 | 229 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F++++++ + ++ +LA++lgL+ +qV vWFqNrRa++k Zpz_sc02328.1.g00030.1.am.mk 176 KKRRLSDEQVEMLELSFREEQKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 229 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 114.1 | 8.7e-37 | 176 | 266 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ Zpz_sc02328.1.g00030.1.am.mk 176 KKRRLSDEQVEMLELSFREEQKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLEN 256 9******************************************************************************** PP HD-ZIP_I/II 83 eveeLreelk 92 ev +L+e+l Zpz_sc02328.1.g00030.1.am.mk 257 EVLRLKERLV 266 ******9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.342 | 171 | 231 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-17 | 174 | 235 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.8E-16 | 174 | 237 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.95E-15 | 176 | 231 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 176 | 229 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 176 | 229 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.1E-5 | 202 | 211 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 206 | 229 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.1E-5 | 211 | 227 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MHGPARKAIT YPATRPASAT GVGRAYLSYI YILLLGLSRD EHSALLNTQL GALWSSLSLF 60 QFLLSSHIDS VSHSAPSLSP ASSRSPRTWQ GDRESEKGVV AADPTGGRGG KAWSNTTSCS 120 TSSYLPPSLT WTPPSWRPTV RVAQGEERPR ARRRRRRVAR CSGAEAGGEV DAGDPKKRRL 180 SDEQVEMLEL SFREEQKLET GRKVHLAAEL GLDPKQVAVW FQNRRARHKS KLLEEEFAKL 240 KQAHDAAILH KCHLENEVLR LKERLVVAEE ELARLRSAGS HAVSGGDVMG RIVSSGSPSS 300 SFSTGTCHQQ AGVGSVVDQL GDDDLIYVPD VADYAYADSS VVEWFSLYGL IGHLCYQRAG 360 IGTELAAERC HSPSNTRVRA HGDLAISGYR ARPGRSTHLI WERRRTIERS SRWNSAQFHH 420 DGRRGHTRSC CNGISRPSRM RRDGRHTCGR PAGKHARRGI LGQRKACAPC DFALRPEPVP 480 DHCLNKIARA RCPHQMIG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 156 | RPRARRRRRR |
2 | 147 | 157 | RPRARRRRRRV |
3 | 151 | 159 | RRRRRRVAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02328.1.g00030.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-38 | homeobox protein 40 |