PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02307.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 492aa    MW: 52672.6 Da    PI: 8.2607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02307.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0585107123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F r  nL+ H r H
  Zpz_sc02307.1.g00060.1.am.mk  85 FVCEICHKGFQRDQNLQLHRRGH 107
                                   89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.57E-784107No hitNo description
Gene3DG3DSA:3.30.160.607.4E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.04685107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63785107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355170134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4157189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-7164189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSAAEEELLQ QRRYRVIKPF MGSPPAPGMG NDDDGDLQRV TEGTSEPPPA GPPAAKKKRS  60
LPGTPDPTAE VIALSPKTLM ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGGGG  120
GGADGGGPSR KRVYVCPEPS CVHHNPARAL GDLTGIKKHY CRKHGEKKWK CERCAKRYAV  180
QSDWKAHAKV CGTREYKCDC GTVFSRLMNK LRARTADRFD DSCTLVPKGK GHVPVSQRPH  240
LGAFCDALAQ ENNKLAQPMN MATVASALQG QAALPPSTLQ ADDDVLDAAE DDFDGMMDTK  300
SPQLRMLPIS DDPPPLGMAG CMLSSLAARS VTTPAFSFSG NSRINNMMGL DMPHSDPGVG  360
FSSASLSATA LLQKAAELGA TTSVYGSAPG FPGSGFGPMF GGGPDRVPPM SPFGPPLPAQ  420
TQLVGFDVGE LLPGQQYRGG SMTRAIGSLM HGGLQQGVDH RRQDDDDDDK RLVDDQSFSG  480
VGPFGSHMGT WT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-23165260370Zinc finger protein JACKDAW
5b3h_F4e-23165260370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02307.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.11e-174protein indeterminate-domain 2-like
TrEMBLA0A1E5VGA41e-178A0A1E5VGA4_9POAL; Zinc finger protein MAGPIE
TrEMBLA0A2T7DBX21e-177A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSb03g045120.11e-169(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-88C2H2 family protein