PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc02258.1.g00040.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 102aa MW: 10696.2 Da PI: 12.4282

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02258.1.g00040.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	49.9	1.2e-15	4	40	37	73
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +eLG+++d++tieWLl+qa+p+i+ +tgt++++as + Zpz_sc02258.1.g00040.1.sm.mk 4 RELGHKSDGQTIEWLLRQAEPSIIVATGTGTTPASVS 40 89***************************99999555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	12.739	1	29	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.6E-11	4	46	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MTPRELGHKS DGQTIEWLLR QAEPSIIVAT GTGTTPASVS TSSFSPTAVD GMPIIAAPMT 60 TPKLHPSLRR ASGRFRRGLT PLASSGASGP RLTSPSRTRR GT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02258.1.g00040.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436782.1	2e-17	PREDICTED: transcription factor TCP7-like
TrEMBL	A0A2U1L6V6	6e-16	A0A2U1L6V6_ARTAN; Transcription factor, TCP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	3e-20	TCP family protein