PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02256.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 507aa MW: 56393.5 Da PI: 6.246

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02256.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.7	2.1e-20	127	223	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++++ +kk++++ vs +m ergf +sp+qC+ek+++l+kryk+++e+ + Zpz_sc02256.1.g00090.1.am.mk 127 KWTSDMVKLLVSAVSYVDEEVEADHgsgsgrrkhavlKKKGKLKPVSMAMTERGFAVSPQQCEEKFNDLSKRYKRLTEILG 207 7*******************876667788889999*****************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ ++e +++ +++++ Zpz_sc02256.1.g00090.1.am.mk 208 RGrACEIVEKPALLEK 223 9956888887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-17	125	250	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MILRPSQFVF LLDSVNFVVE NGGFFFGCLL RPGVGVFSSD MEGNVPPRAL IPGSPFDLEP 60 AMQQPRRQQF HFAQPQVHQG AFAVPAPNPA PELRSVVKTS LSDEEDAYDD LHDNGKTATA 120 SQSHRVKWTS DMVKLLVSAV SYVDEEVEAD HGSGSGRRKH AVLKKKGKLK PVSMAMTERG 180 FAVSPQQCEE KFNDLSKRYK RLTEILGRGR ACEIVEKPAL LEKISLSARL KEEAKKHLNS 240 KHLHYEEMCS YHNRNRFCLL DDPTLQKSLR MALRSGHEQG TKTSFGYEDE YDQAFVSDDD 300 DEDDEYNDEA NARDRHHRGH NTKKLKHDHE KTHCGFSKEK DRELEKMRLE NEKMAMEKKH 360 MELELKLKEI EMGAMAQERN EKSIMPCPVC SLETLADAQQ AAAMGACATK SGDLKVQSEP 420 PLVVEDPPVA EGEKVKADVV PPADVGRQRA QRVAQRGQES GGEARVAEEE KRVNPDSIRV 480 ATVAAAATVA CRSDECQGSV VADGASA

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MILRPSQFVF LLDSVNFVVE NGGFFFGCLL RPGVGVFSSD MEGNVPPRAL IPGSPFDLEP  60
AMQQPRRQQF HFAQPQVHQG AFAVPAPNPA PELRSVVKTS LSDEEDAYDD LHDNGKTATA  120
SQSHRVKWTS DMVKLLVSAV SYVDEEVEAD HGSGSGRRKH AVLKKKGKLK PVSMAMTERG  180
FAVSPQQCEE KFNDLSKRYK RLTEILGRGR ACEIVEKPAL LEKISLSARL KEEAKKHLNS  240
KHLHYEEMCS YHNRNRFCLL DDPTLQKSLR MALRSGHEQG TKTSFGYEDE YDQAFVSDDD  300
DEDDEYNDEA NARDRHHRGH NTKKLKHDHE KTHCGFSKEK DRELEKMRLE NEKMAMEKKH  360
MELELKLKEI EMGAMAQERN EKSIMPCPVC SLETLADAQQ AAAMGACATK SGDLKVQSEP  420
PLVVEDPPVA EGEKVKADVV PPADVGRQRA QRVAQRGQES GGEARVAEEE KRVNPDSIRV  480
ATVAAAATVA CRSDECQGSV VADGASA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	170	KKKGKLKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02256.1.g00090.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806041.1	1e-130	uncharacterized protein LOC112884725
TrEMBL	A0A0A9DXA8	1e-130	A0A0A9DXA8_ARUDO; Uncharacterized protein
TrEMBL	A0A3L6RUN1	1e-130	A0A3L6RUN1_PANMI; Uncharacterized protein
STRING	Pavir.Ab01884.1.p	1e-130	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-47	sequence-specific DNA binding transcription factors