PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc02246.1.g00010.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 296aa MW: 30997.7 Da PI: 9.6168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02246.1.g00010.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.0007	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+dCg+s+ L H ++H Zpz_sc02246.1.g00010.1.sm.mk 116 YTCKDCGRSYAKFRALGGHVSLH 138 9*********9888887777766 PP
2	zf-C2H2	16.8	2e-05	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+Fs L H+r H Zpz_sc02246.1.g00010.1.sm.mk 175 HVCRKCGKVFSKGTALGGHMRAH 197 79*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	116	143	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	116	138	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0013	116	139	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.28E-8	116	138	No hit	No description
PROSITE pattern	PS00028	0	118	138	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.28E-8	170	197	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	174	199	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.2E-8	174	197	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.048	175	197	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.612	175	202	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	177	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGSSSPPLRR LRPDDDDADK GRFVSDDGVR DLRPQSPTRT WESDRTISDD DDDVSPASVL 60 RTEPNERVVG VDGGWATTGK RSRSTEGKQA ATAAPAAKQL PRPVPPPRDD QAPLKYTCKD 120 CGRSYAKFRA LGGHVSLHRI REREAAAAAA AAAGTGARDG GALAHRGRKS EGRTHVCRKC 180 GKVFSKGTAL GGHMRAHAGD AAVAPVVPEG NKKRCLEPAV DDFVASSTPG LSSAAPIMPE 240 GNKKRCHEPA VDDVAAPPTA GVSSAAPIKT EEASSPAPVR SGRVLLFGVD ISRPPV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02246.1.g00010.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18437	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19580.2	2e-10	zinc-finger protein 2