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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02213.1.g00040.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 15961.2 Da PI: 9.6148 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Zpz_sc02213.1.g00040.1.sm.mk 44 FECKTCSRRFPSFQALGGHRASH 66 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.31E-7 | 42 | 110 | No hit | No description |
Pfam | PF13912 | 4.4E-13 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.0E-8 | 87 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.1 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009643 | Biological Process | photosynthetic acclimation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MKRLTFGQEE PEVSIISVAQ EVMLLLACAG GGGGEPSASS PRVFECKTCS RRFPSFQALG 60 GHRASHKRPR QQGTGAAGTA EPAKARAHGC GVCGVEFALG QALGGHMKRH RTVVGSASDD 120 RGLPEAEAER KRKADEARAR GMLSLDLNIA PP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02213.1.g00040.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795407.1 | 3e-58 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A2T7BZ26 | 1e-57 | A0A2T7BZ26_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04509.1.p | 5e-50 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 5e-27 | C2H2 family protein |