PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02201.1.g00050.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 352aa MW: 37058.8 Da PI: 9.665

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02201.1.g00050.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	1e-38	33	93	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGG+lrn+P+Ggg+r+nk+s+ Zpz_sc02201.1.g00050.1.sm.mk 33 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGTLRNIPIGGGCRRNKRSR 93 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.8E-32	35	91	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	37	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MTAVAAGDEL LKGGTSGGGG TTTPRQQQPP PPPEQGLRCP RCDSPNTKFC YYNNYSLSQP 60 RHFCKTCRRY WTKGGTLRNI PIGGGCRRNK RSRSTTSRVS LNLRGVTVNA SIDQQQSSAR 120 LGRFLGGGGA MVMSSPIGGV TSADYQPGAA AGSMPPPRLN IPAVGQYVPF VEWSSGPTAV 180 DLTGGGGNSS AAAAMRSTIA SFIESQSFIN QDLHWKLQQQ RLSTVSLAQP TSSAAGHTAP 240 RRVGAGAFMQ ISAGAPVMEP MPTVTSWIMD SSCVFLSPPQ PANTTSAVMA TTTPNCNINS 300 GLSSGDHATF NNSCDVGTIP TWGNIVVDVY NATFPLNWYK DVIARLGVGM TF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MTAVAAGDEL LKGGTSGGGG TTTPRQQQPP PPPEQGLRCP RCDSPNTKFC YYNNYSLSQP  60
RHFCKTCRRY WTKGGTLRNI PIGGGCRRNK RSRSTTSRVS LNLRGVTVNA SIDQQQSSAR  120
LGRFLGGGGA MVMSSPIGGV TSADYQPGAA AGSMPPPRLN IPAVGQYVPF VEWSSGPTAV  180
DLTGGGGNSS AAAAMRSTIA SFIESQSFIN QDLHWKLQQQ RLSTVSLAQP TSSAAGHTAP  240
RRVGAGAFMQ ISAGAPVMEP MPTVTSWIMD SSCVFLSPPQ PANTTSAVMA TTTPNCNINS  300
GLSSGDHATF NNSCDVGTIP TWGNIVVDVY NATFPLNWYK DVIARLGVGM TF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02201.1.g00050.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947524	1e-67	EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBank	KJ726977	1e-67	KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796800.1	3e-77	dof zinc finger protein DOF5.7-like
TrEMBL	A0A3L6SBJ5	4e-77	A0A3L6SBJ5_PANMI; Dof zinc finger protein DOF5.7-like
STRING	Si036311m	1e-71	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-30	DOF zinc finger protein 1