PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02195.1.g00130.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Dof
Protein Properties Length: 301aa    MW: 31188.8 Da    PI: 10.1389
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02195.1.g00130.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.17.2e-37102155457
                        zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrk 57 
                                   + l+cprC+st+tkfCyynnysl qPr+fCk+CrryWt+GGalrnvPvGgg+r+
  Zpz_sc02195.1.g00130.1.sm.mk 102 AGLPCPRCESTDTKFCYYNNYSLGQPRHFCKGCRRYWTRGGALRNVPVGGGTRR 155
                                   6789*************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.8E-31104155IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.565104158IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-17106146IPR003851Zinc finger, Dof-type
PROSITE patternPS013610106142IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPASKRPKPD TSNEMHGVGN QIVVSSGGTR YNYKRPFQPR SQFLQLRTGQ RQEEQQLELA  60
MVRRSAAGAT EAGHQVTEGN ALALVAAAAA GGGGGGGPKE PAGLPCPRCE STDTKFCYYN  120
NYSLGQPRHF CKGCRRYWTR GGALRNVPVG GGTRRGVPAA RRKRATSASS SSSPASALPP  180
PPLASSXXXS PAPLAMSAPA ACSATARPYD LPPFKPALAS PVAAVGDPDC RLLDLGSSFT  240
SLLAPAAPDV RFSAGFLVGG LPPVMMPPPP ASSAPALLPP PVSQALPEGL IWGMGWPDLS  300
I
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02195.1.g00130.1.sm.mk
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-47HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457194.22e-62dof zinc finger protein DOF3.4
TrEMBLA0A1B6Q1417e-61A0A1B6Q141_SORBI; Uncharacterized protein
STRINGPavir.Ea00244.1.p2e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-22DNA binding with one finger 2.4