PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02192.1.g00010.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 256aa    MW: 27888.6 Da    PI: 9.9241
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02192.1.g00010.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1401.4e-43111461128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrF+Ptd el+ +yL++++ +++l+++  i++++i+ ++P+dL p     +e e yfF++++ ky +g+r+nrat
  Zpz_sc02192.1.g00010.1.sm.mkhc  11 LPPGFRFRPTDVELILHYLRRRAFESPLPAAVDIPDIRILAHDPSDLlP--PGWSEPERYFFTCKEAKYVKGRRANRAT 87 
                                     79***************************9666**************43..3447789********************* PP

                             NAM  79 ksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      +gyWkatgk+k+v ++         +  lvg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Zpz_sc02192.1.g00010.1.sm.mkhc  88 GAGYWKATGKEKPVAVAmpaaapgghQAVLVGMKRSLVFYRGKPPSGSKTDWVMHEYRL 146
                                     ***************998888887655556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-489178IPR003441NAC domain
PROSITE profilePS5100547.1811178IPR003441NAC domain
PfamPF023653.4E-2512146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATKDSVKSQ LPPGFRFRPT DVELILHYLR RRAFESPLPA AVDIPDIRIL AHDPSDLLPP  60
GWSEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAMPAAAP GGHQAVLVGM  120
KRSLVFYRGK PPSGSKTDWV MHEYRLAGAG LAPCRRAQAR KPPAHPDEGW VLCRVFRKKG  180
SADAAGAAAP ADAEEKEEED GAATASGFID FFARADAARR RRASSPMVSS SCLTDSSHEP  240
PQQLCRDQET TSRGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-361118217169NO APICAL MERISTEM PROTEIN
1ut4_B8e-361118217169NO APICAL MERISTEM PROTEIN
1ut7_A8e-361118217169NO APICAL MERISTEM PROTEIN
1ut7_B8e-361118217169NO APICAL MERISTEM PROTEIN
4dul_A8e-361118217169NAC domain-containing protein 19
4dul_B8e-361118217169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02192.1.g00010.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443168.11e-115NAC domain-containing protein 83
SwissprotQ9FY934e-51NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A3L6RAA21e-119A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGSb08g014060.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-50NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]