PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02183.1.g00080.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 870aa    MW: 94980.4 Da    PI: 10.4966
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02183.1.g00080.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.23.1e-12829853125
                       G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                                   kprlrWtp+LHerFv+av++LGG++
  Zpz_sc02183.1.g00080.1.am.mk 829 KPRLRWTPDLHERFVDAVTKLGGPD 853
                                   79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509982.75E-56260560IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
CDDcd002002.93E-39275558No hitNo description
PROSITE profilePS5029431.428278567IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.4E-59278562IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.6E-5296335IPR001680WD40 repeat
PfamPF128941.2E-5302360IPR024977Anaphase-promoting complex subunit 4, WD40 domain
PROSITE profilePS5008212.012303344IPR001680WD40 repeat
SMARTSM0032011338376IPR001680WD40 repeat
SMARTSM003201.2E-9380419IPR001680WD40 repeat
PfamPF004003.3E-7384419IPR001680WD40 repeat
PROSITE profilePS5008215.154387428IPR001680WD40 repeat
PROSITE patternPS006780406420IPR019775WD40 repeat, conserved site
SMARTSM003200.0018431473IPR001680WD40 repeat
PfamPF004000.013435473IPR001680WD40 repeat
PROSITE patternPS006780460474IPR019775WD40 repeat, conserved site
SMARTSM00320410476516IPR001680WD40 repeat
SMARTSM003205.4E-5519558IPR001680WD40 repeat
PfamPF004000.058525558IPR001680WD40 repeat
PROSITE profilePS5008212.681526559IPR001680WD40 repeat
Gene3DG3DSA:1.10.10.601.5E-10826854IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-7829854IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
LGATWRAEIK PPQRNGYFFS GASRYGLRFT HRLPQRTPPP PRPSAAKRFI VALGSPISSP  60
SAAAAIAGTA PPRDQISSRS DAPLPFTTLF DLFVRLHVLL SYIVFIVLWG NLLGYLGSKS  120
ISSQKSSRRM APRPPLQEAG SRPYMPSLCS GPRNPSAKCY GDRFIPDRSA MDMDMAHYLL  180
TEPKKGKENP AASPAKEAYR KLLAEKLLNN RTRILAFRNK PPEPDNILAD LRADAASFQA  240
KPVKQRRHIP QSADRTLDAP ELVDDYYLNL LDWGSNNVLS IALGNTVYLW DANSGSTSEL  300
VTIDEDNGPV TSVSWAPDGR HIAVGLNSSD IQLWDSTSNR LLRTMRGVHE WRVGSLAWNN  360
HILTTGGMDG KIVNNDVRIR KHVVHTYRGH EQEVCGLKWS GSGQQLASGG NDNLLHIWDV  420
SMASSVQSAG RTQWLHRLPD HLAAVKALAW CPFQSNLLAS GGGGGDRSIK FWNTHTGACL  480
NSVDTGSQVC ALLWNKNERE LLSSHGFTQN QLTLWKYPSM VKMADLNGHT SRVLFMAQSP  540
DGYTVASAAA DETLRFWSVF GTPEPTPKAS KASSYTGIFN TSGAAVSTQP VARGHSWREY  600
SSAISAEHFA HWHRGGTSPG CRVARDLPNN TVLVGSSFRR GGKPMCDFAA CAVFSLSVRQ  660
ASTQPPNAAR DTSTVRGVRT QPSSCCPKER RRVVGDLTKH QDARSFCSLR RCNSPDPSSS  720
RPRFLTHMMP STFSAAPSAG PLSSSSPRRL STGASGQRNI PCVGLQQEPV RSSHSTGEGL  780
RGRRRGDRRG EVGARVQLSS ARWLTSCRGG KGMQGTYGGG MAALSRDPKP RLRWTPDLHE  840
RFVDAVTKLG GPDSLAQLVS HCKSDHRALC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ggd_A1e-1211615608405Cell division cycle protein 20 homolog
4ggd_B1e-1211615608405Cell division cycle protein 20 homolog
5g04_R1e-12116156076473CELL DIVISION CYCLE PROTEIN 20 HOMOLOG
5khr_R1e-12116156076473Cell division cycle protein 20 homolog
5khu_R1e-12116156076473Cell division cycle protein 20 homolog
5khu_S1e-12116156076473Cell division cycle protein 20 homolog
5lcw_R1e-12116156076473Cell division cycle protein 20 homolog
6f0x_Q1e-12116156076473Cell division cycle protein 20 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. {ECO:0000250, ECO:0000269|PubMed:21687678}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02183.1.g00080.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression starts to rise in the S-phase and peaks in the M-phase with a non-negligible basic expression level also in the other cell cycle phases. {ECO:0000269|PubMed:21687678}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691685.10.0PREDICTED: cell division cycle 20.2, cofactor of APC complex-like
SwissprotQ9SZA40.0CDC21_ARATH; Cell division cycle 20.1, cofactor of APC complex
TrEMBLJ3M1180.0J3M118_ORYBR; Uncharacterized protein
STRINGOB04G30930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.22e-11G2-like family protein
Publications ? help Back to Top
  1. Capron A,Okrész L,Genschik P
    First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase.
    Trends Plant Sci., 2003. 8(2): p. 83-9
    [PMID:12597875]
  2. Pérez-Pérez JM, et al.
    Specialization of CDC27 function in the Arabidopsis thaliana anaphase-promoting complex (APC/C).
    Plant J., 2008. 53(1): p. 78-89
    [PMID:17944809]
  3. Lima Mde F, et al.
    Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants.
    BMC Plant Biol., 2010. 10: p. 254
    [PMID:21087491]
  4. Kevei Z, et al.
    Conserved CDC20 cell cycle functions are carried out by two of the five isoforms in Arabidopsis thaliana.
    PLoS ONE, 2011. 6(6): p. e20618
    [PMID:21687678]
  5. Cromer L, et al.
    OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM.
    PLoS Genet., 2012. 8(7): p. e1002865
    [PMID:22844260]
  6. Iwata E, et al.
    Roles of GIG1 and UVI4 in genome duplication in Arabidopsis thaliana.
    Plant Signal Behav, 2012. 7(9): p. 1079-81
    [PMID:22899078]
  7. Cromer L, et al.
    Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis.
    Curr. Biol., 2013. 23(21): p. 2090-9
    [PMID:24206843]
  8. Niu B, et al.
    Arabidopsis Cell Division Cycle 20.1 Is Required for Normal Meiotic Spindle Assembly and Chromosome Segregation.
    Plant Cell, 2015. 27(12): p. 3367-82
    [PMID:26672070]