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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02156.1.g00130.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 23818.8 Da PI: 10.2086 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.7e-31 | 140 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-E..EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefpr..sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s fpr sYYrCt++ C+vkk+v+r a+d++vv++tYeg Hnh+ Zpz_sc02156.1.g00130.1.sm.mk 140 LDDGYRWRKYGQKAVKNSAFPRlkSYYRCTHHACNVKKQVQRLAKDTSVVVTTYEGVHNHP 200 59*******************8889***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-31 | 126 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-26 | 132 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.016 | 135 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 140 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-24 | 141 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEDSLRGAHQ HQLSEFLALT STGAAPRPQE KQQGSSNVAA THLAPTGAVS CSPLVDWTSL 60 LLSSAPGLPQ SQKHAAAGAC EQENAGGGEG SSTVTTATAS GGGSSSCKMV KAGRKGGGRG 120 KKKASRPRFA FQTRSESDVL DDGYRWRKYG QKAVKNSAFP RLKSYYRCTH HACNVKKQVQ 180 RLAKDTSVVV TTYEGVHNHP CEKLMEALNP ILRQLQLLTQ LGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 130 | 199 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 130 | 199 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02156.1.g00130.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958074 | 1e-100 | EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148624.1 | 3e-73 | WRKY23 - superfamily of TFs having WRKY and zinc finger domains | ||||
Swissprot | Q9FFS3 | 4e-53 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | K7VHJ9 | 7e-73 | K7VHJ9_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G015433_P01 | 1e-73 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 5e-48 | WRKY DNA-binding protein 24 |