PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02112.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 644aa MW: 67919.2 Da PI: 10.5087 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Zpz_sc02112.1.g00070.1.am.mk 168 FFCEICSKGFQRDQNLQLHRRGH 190 67*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00023 | 244 | 266 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Zpz_sc02112.1.g00070.1.am.mk 244 WKCDKCDKKYAVQSDWKAHVKIC 266 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 167 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.29E-7 | 167 | 190 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 168 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.093 | 168 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 170 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 209 | 239 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 232 | 265 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.29E-7 | 239 | 264 | No hit | No description |
SMART | SM00355 | 71 | 244 | 264 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MQPVLLHFDP SLLSAHGDRL ETITIAFRLN QWRARGPVRV PKPDANPRHR LPPRGRHGAL 60 TASGFLAPCC LSPQAARQRS SSRRPVARLG TRVVRFGRRP TAIRKETTGE MEVEATTTTT 120 AASSSGRAPQ LPPPGPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFFC EICSKGFQRD 180 QNLQLHRRGH NLPWKLRQRS GKEPRKRVYV CPEPSCVHHD PTRALGDLTG IKKHFCRKHG 240 EKKWKCDKCD KKYAVQSDWK AHVKICGSRE YRCDCGTLFS RRDSFITHRA FCDALAEENA 300 NARAGAAEEE NGSSAAVGPP PAPPPTQAPP PAAPAPLKQQ PHPPFPAAAP APHHAEQRNE 360 RETNASEPVQ FTPPPPQQAP LPVSSQAPAS AANVSISSST SSVVASSQSQ IGGGLFAPSS 420 MAPAPQFTNL GPERALPVKP PPLCLSTDAS SSIFAAPVAS DRQLRIAPPP PPSPSPHMSA 480 TALLQKAAQM GATSSSSSFL RGLGLDVSTS SPGPSSSGQP RHAETPLQQW PPRLGTEAAA 540 PMLSAGLGLG LPYDSTGATV CLPERMMGQS ALFAAKPATL DFLGLGMSPT AGASASRGLS 600 AVIQPIGGAV GIGGSSAGAA EAFGAEHGAQ AKPWERNPSS SQIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-33 | 240 | 300 | 3 | 63 | Zinc finger protein JACKDAW |
5b3h_F | 3e-33 | 240 | 300 | 3 | 63 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02112.1.g00070.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054502 | 0.0 | BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds. | |||
GenBank | BT054618 | 0.0 | BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds. | |||
GenBank | EU955578 | 0.0 | EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985335.1 | 0.0 | protein indeterminate-domain 1 | ||||
Swissprot | Q9LVQ7 | 1e-136 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | K4A877 | 0.0 | K4A877_SETIT; Uncharacterized protein | ||||
STRING | Si035083m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-88 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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