PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc02094.1.g00020.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 32994.2 Da PI: 10.0229 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 109 | 148 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l Zpz_sc02094.1.g00020.1.sm.mkhc 109 EDDKIIDLVKKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 148 9************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 154 | 197 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ Zpz_sc02094.1.g00020.1.sm.mkhc 154 KDAWTPEEERALINAHRVYGNK-WAEIAKVLP-GRTDNSIKNHWNS 197 689*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.2E-10 | 61 | 150 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.644 | 91 | 148 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-13 | 109 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 109 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.25E-13 | 109 | 148 | No hit | No description |
SuperFamily | SSF46689 | 2.62E-30 | 127 | 208 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.044 | 149 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-18 | 153 | 201 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-17 | 154 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-15 | 156 | 199 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 156 | 203 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAEAAQVGCV ENRQPLAASS SSVSDGSSCG GGGRAGVSPP VSSSANSIPG LRRTSGPIRR 60 AKGGWTLEED DTLRTAVEAF KGQRYNACIA GKRFSTLSLS KALGLKRFED DKIIDLVKKY 120 GPTKWSVIAK SLPGRIGKQC RERWHNHLNP DIRKDAWTPE EERALINAHR VYGNKWAEIA 180 KVLPGRTDNS IKNHWNSSLK KKLDAYSTTN VLPVSKLHGR DDFKDKIKPV APGNHLDLNR 240 VSSVGSKDVP GIAHRSNMSP LSQPYKSETV KDCSAVQGLE SDSVRDKGLE IDSFHEKGIE 300 GPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-46 | 109 | 205 | 14 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc02094.1.g00020.1.sm.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR584664 | 1e-121 | KR584664.1 Secale cereale MYB3R1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817104.1 | 1e-129 | transcription factor MYB3R-2-like | ||||
Swissprot | Q0JHU7 | 1e-123 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0D9YH52 | 1e-135 | A0A0D9YH52_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA10G04750.1 | 1e-134 | (Oryza nivara) | ||||
STRING | OBART01G36770.1 | 1e-134 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 6e-76 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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