PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc02078.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 813aa MW: 88501 Da PI: 8.3845

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc02078.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	38	91	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k Zpz_sc02078.1.g00020.1.am.mk 38 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 91 456899***********************************************9 PP
2	HD-ZIP_I/II	130.3	7.5e-42	37	129	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrls eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L+ Zpz_sc02078.1.g00020.1.am.mk 37 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRLDHDALR 117 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelke 93 +++++L +e+ke Zpz_sc02078.1.g00020.1.am.mk 118 RDKDALLAEIKE 129 *****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-18	32	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	33	93	IPR001356	Homeobox domain
SMART	SM00389	2.1E-18	36	97	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-15	38	91	IPR001356	Homeobox domain
CDD	cd00086	2.99E-16	38	94	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-19	40	100	IPR009057	Homeodomain-like
PRINTS	PR00031	6.1E-5	64	73	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.1E-5	73	89	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.8E-16	93	134	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MEAVLLPYGD DGYGGVGMEA EGDAEEEMMA CGGGGGEKKR RLSVEQVRAL ERSFEVENKL 60 EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDYA ALRHSYDALR LDHDALRRDK 120 DALLAEIKEL KAKLGDEETT ASFTSVKAEL AAFDEPPTAG TGSSESDSSA VLNDADPAGA 180 TPPTELPPAP EIQQGTLLGS ATAAVAGTAA ARQAELLFHG SFLKVEEDDT GFLDDDEPCG 240 GFFAVEQPPP MTVKIEECRG RAEQVNGHPT GRCPWGRGHV KRRHWPPIDV PGLPVTPMPR 300 RERAWPCARV VASAKAWWLL WSIRASSALY LLVVLRHCRH VVEIIPVPLF HAVVVVLLIV 360 ICGCRNEMNA WITGLKLSPF FSTSPSGDHA RITLTKAQPM DPTLTSSQGT ETINAAAIPS 420 FARKQEEDWS LEVAAPTVQE ARCNGGGDCT ASDDHFPSGP AWVARVNSQP HATSSSRTPL 480 HRVAARFEFE GQERFNECCG SGRALVQGPW SARGSHRPAQ ARVKLSSAPS NPFPPCTRGQ 540 PASRVRLLRM WATRDSTIRA ARARRQPEPG TRDRSGTLHS RMAFVPLDRV NNDWRVAQSA 600 CTGIEQCAPT TTDMEPRRME SMERTRIKSQ EHENEKKRSG RVVSAPLPKD SKHGVTIATC 660 DRGPGQVVER FVVKGNGSGK AAAPVATSSA NHECIPISPL PIRGGQGHGQ LRATVTSTVL 720 LCCRMIGDER GSGRCHLADL ETQPDPTRRR MMASVRHATN AAAYSVAGSR RRGEGKKAVA 780 RDRPVDSAVD SESDATIVQT VVREIPGGAK HVE

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MEAVLLPYGD DGYGGVGMEA EGDAEEEMMA CGGGGGEKKR RLSVEQVRAL ERSFEVENKL  60
EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDYA ALRHSYDALR LDHDALRRDK  120
DALLAEIKEL KAKLGDEETT ASFTSVKAEL AAFDEPPTAG TGSSESDSSA VLNDADPAGA  180
TPPTELPPAP EIQQGTLLGS ATAAVAGTAA ARQAELLFHG SFLKVEEDDT GFLDDDEPCG  240
GFFAVEQPPP MTVKIEECRG RAEQVNGHPT GRCPWGRGHV KRRHWPPIDV PGLPVTPMPR  300
RERAWPCARV VASAKAWWLL WSIRASSALY LLVVLRHCRH VVEIIPVPLF HAVVVVLLIV  360
ICGCRNEMNA WITGLKLSPF FSTSPSGDHA RITLTKAQPM DPTLTSSQGT ETINAAAIPS  420
FARKQEEDWS LEVAAPTVQE ARCNGGGDCT ASDDHFPSGP AWVARVNSQP HATSSSRTPL  480
HRVAARFEFE GQERFNECCG SGRALVQGPW SARGSHRPAQ ARVKLSSAPS NPFPPCTRGQ  540
PASRVRLLRM WATRDSTIRA ARARRQPEPG TRDRSGTLHS RMAFVPLDRV NNDWRVAQSA  600
CTGIEQCAPT TTDMEPRRME SMERTRIKSQ EHENEKKRSG RVVSAPLPKD SKHGVTIATC  660
DRGPGQVVER FVVKGNGSGK AAAPVATSSA NHECIPISPL PIRGGQGHGQ LRATVTSTVL  720
LCCRMIGDER GSGRCHLADL ETQPDPTRRR MMASVRHATN AAAYSVAGSR RRGEGKKAVA  780
RDRPVDSAVD SESDATIVQT VVREIPGGAK HVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	68	ERKARLA
2	85	93	RRARWKTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc02078.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	5e-37	homeobox protein 16