PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02060.1.g00120.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 568aa    MW: 62262.6 Da    PI: 9.2809
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02060.1.g00120.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.3e-321872782102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+
  Zpz_sc02060.1.g00120.1.am.mk 187 FVAKTYQMVCDPRTDALVRWGKENNSFVVVDPAGFSQLLLPCFFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFA 258
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   h+sF +g+ +ll +i r+k+
  Zpz_sc02060.1.g00120.1.am.mk 259 HESFLRGQMHLLPRIVRRKK 278
                                   *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-35183276IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-50183276IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-32184276IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-16187210IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-28187276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-16225237IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340226250IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-16238250IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MPNLETAIEL PLGDQLGSVA SVCPRSGRRA SLTARQRLAD QPCQQQVRLS GGAAGPPGGC  60
SDEPHATPEL SARPTAAPFR WPFGAGHGCS RLALARRPGD RRRRAAAHRN SIDHKTFADH  120
ESTLVARASI SAPPAREWKR GSLPDAFLPL VTALVIERER RMDGLHTELA LGLIGFGGGA  180
QLQTAPFVAK TYQMVCDPRT DALVRWGKEN NSFVVVDPAG FSQLLLPCFF KHSNFSSFVR  240
QLNTYGFRKV HPDRWEFAHE SFLRGQMHLL PRIVRRKKRG EGGASCSAPA GGGGGLANLG  300
DAHRPLDEGN DEEREALAEE VQRLRQEQAT IGEELARMSR RLQATERQPD QLMSFLARLA  360
EDPDGVTRNL MEQAAEKKRR RLQLDSAPVV LPVPPPPPPP APPPPPLALG GAAVDCDDWQ  420
WAEQKPAILF PSFDPPSSRC EVQQVPDFAA GRDVGAGVIT FDRDTAAETP LRLLRRRTLC  480
NACDVRLRAD RVLRETEQRA AQRRARHAAA CGAGLIGSGQ ALVKDHQPAT LFLHVDLHYR  540
YGYHAVHQVR GGVDQQVAGR RQPCHVQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-2218727610110Heat shock factor protein 1
5hdn_A8e-2218727610110Heat shock factor protein 1
5hdn_B8e-2218727610110Heat shock factor protein 1
5hdn_C8e-2218727610110Heat shock factor protein 1
5hdn_D8e-2218727610110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1377381KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc02060.1.g00120.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-131AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817664.11e-130heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-109HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A2S3HTS71e-128A0A2S3HTS7_9POAL; Uncharacterized protein
TrEMBLA0A2T7DJI41e-128A0A2T7DJI4_9POAL; Uncharacterized protein
STRINGPavir.Eb01618.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.19e-61heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]