PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01974.1.g00080.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 385aa    MW: 40667.5 Da    PI: 6.8925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01974.1.g00080.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000252813141654
                                     HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     + ++   L++l+ +      +K + a++L +++eYIk L
  Zpz_sc01974.1.g00080.1.sm.mkhc 281 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 314
                                     555666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10275333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-4275318No hitNo description
Gene3DG3DSA:4.10.280.101.3E-7275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGDHAEMLHA APAMYNAAGV AAPHGGWWNT AVSAAATCST ELAGFSTWSS ALAASYDMAA  60
EGAKAKSATT ASSGSPGNNS SVTFQEPTAG IADAAGVGAA VQQPLASFTE WAHLMNNAGV  120
TLHGFLQDDL RDMSSRTDQQ SYINAPSLMN PSSNNLALQG HHEQDHGPQQ LLSNLGSELL  180
LSPTSPYGIQ SSLLRSLMEP TAAVAKPALP PGFQQHDQYG QQMGQAAAAA RFTPPLQFTN  240
DAAFWNPYAG NKKANGQPAL KKPRLETPSP LPTFKVRKEK LGDRVTALQQ LVAPFGKTDT  300
ASVLHETIEY IKFLHDQVGA LSAPYLKNGH QVPHLKSSSP DKSKDGHGEV SLKGRGLCLV  360
PISSTFAVAS EVPVDFWNPF GANFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01974.1.g00080.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.35e-48bHLH family protein