PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01971.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 361aa    MW: 39197.1 Da    PI: 7.6826
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01971.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.44.1e-29170220358
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                   +vrY++Cl+NhAa+lGgh+vDGCgEfmp      + +alkCaACgCHR+FHR++  
  Zpz_sc01971.1.g00020.1.am.mk 170 AVRYNDCLRNHAAALGGHVVDGCGEFMPG-----DDDALKCAACGCHRSFHRKDDG 220
                                   79**************************7.....568****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.0E-24171218IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-24172218IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-15173218IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.187173218IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.9E-16291343IPR009057Homeodomain-like
SuperFamilySSF466897.7E-8292340IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVFWWHPTSS RQGGPWEEDE ESKGRGSPCE ENEETSLSIP RHDCVLMFLL TDIVPNLAKP  60
SRLSSLVVGL PPPHGEGHTL SLQTQAANAT TLRPERVAKL RQSKPPVVLA LTRSATRSPA  120
PRHALMEFTT TRGQEQEPIH AMGASSTPPL AHSAVPRAPP SSSSSSSPSA VRYNDCLRNH  180
AAALGGHVVD GCGEFMPGDD DALKCAACGC HRSFHRKDDG QQQPRHHLLL PAPAPAPPVT  240
PTAPRVPLLM PPPPHASSYP PYAPFAYHGT PSASGGTTTE SSSEERAPPS AQGQHQQQPA  300
PRKRFRTKFT PEQKELMLAF AERLGWRMQK QDEALVEQGS TRILFPEIEA HAARDEMMRG  360
G
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01971.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.14e-67zinc-finger homeodomain protein 6-like
TrEMBLA0A3L6SWE31e-70A0A3L6SWE3_PANMI; Zinc-finger homeodomain protein 6-like
STRINGPavir.J15638.1.p1e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-18zinc finger homeodomain 1