PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01970.1.g00080.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 317aa MW: 34194.6 Da PI: 9.8426

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01970.1.g00080.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.2	4.6e-30	177	236	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnh Zpz_sc01970.1.g00080.1.sm.mk 177 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCPVKKKVQRSAEDKTILVATYEGEHNHG 236 58*************************99**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	26.142	172	238	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.9E-29	175	238	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-26	176	238	IPR003657	WRKY domain
SMART	SM00774	7.7E-35	177	237	IPR003657	WRKY domain
Pfam	PF03106	6.6E-25	178	235	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDPWIGQPSL SLDLNVGLPT ARPVPAKKAL VEENFLPAKK GRGQVEALEA ELRLVSEENS 60 RLSEMLRAAV AKYTELRGHV NDMMAAGHTR QSSTSEGGSA SPPRKRVRSD SLDTKPLATA 120 ASGFAVPDQM ECTSGAAAAT AAAVAFHEPG RRIREGCKPK VTRQYVHADP SDLSLVVKDG 180 YQWRKYGQKV TKDNPCPRAY FRCSFAPSCP VKKKVQRSAE DKTILVATYE GEHNHGQPTQ 240 HDGRNAAAKP QTSNAAAARA LSPPQQKQQE AAGPSEEVVR KNLAEHMAAT LTRDPGFKAA 300 LVSALSGRIL ELSPTRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-21	176	238	13	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250\|UniProtKB:Q6QHD1, ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:21961049, ECO:0000269\|PubMed:23462973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01970.1.g00080.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269\|PubMed:21726398, ECO:0000269\|PubMed:23462973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728369	1e-106	KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810564.1	1e-159	WRKY transcription factor WRKY28-like isoform X2
Swissprot	Q0DAJ3	1e-129	WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBL	A0A3L6PH63	1e-159	A0A3L6PH63_PANMI; Putative WRKY transcription factor 60
STRING	Pavir.J39636.1.p	1e-164	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1822	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	4e-58	WRKY DNA-binding protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Berri S, et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] Delteil A, et al. Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] Peng Y,Bartley LE,Canlas P,Ronald PC OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] Chujo T, et al. OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]