PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01968.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 119aa    MW: 13290 Da    PI: 8.8174
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01968.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.23.1e-095397147
                          FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                                  +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +   
  Zpz_sc01968.1.g00140.1.sm.mk 53 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL 97
                                  6****************99988..9999***********98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-75397IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDTSHSDPCA RNSLQPQFRD VSTSSENNIA LDKHEIVNPR VGMTFETVDL AYQFYLEYGY  60
RAGFGVSKRT SHSVDGVKYR ATFVCYKGGI ARIKPGLKAR RRLVAKTGSV EAADECELH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01968.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619448e-57AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06.
GenBankAK3640848e-57AK364084.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021I21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669269.13e-57protein FAR1-RELATED SEQUENCE 6
RefseqXP_008669270.13e-57protein FAR1-RELATED SEQUENCE 6
RefseqXP_008669271.13e-57protein FAR1-RELATED SEQUENCE 6
RefseqXP_008669273.13e-57protein FAR1-RELATED SEQUENCE 6
RefseqXP_020403855.13e-57protein FAR1-RELATED SEQUENCE 6
RefseqXP_020403857.13e-57protein FAR1-RELATED SEQUENCE 6
RefseqXP_023157376.13e-57protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1D6E8G66e-56A0A1D6E8G6_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGPavir.Ga01387.1.p7e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-09FAR1-related sequence 11