PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01963.1.g00120.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 305aa    MW: 34124 Da    PI: 6.5766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01963.1.g00120.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.94.1e-18140207359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STT....EEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpk....vveitYegeHnhe 59 
                                   Dg +WrKYGqK++++ ++prsYYrCt++   gC+++k v++++e    dp+    + +++Y+g+H+++
  Zpz_sc01963.1.g00120.1.sm.mk 140 DGRQWRKYGQKKINKEKYPRSYYRCTYRqeqGCKATKTVQQQDEsagtDPTtaavMYTVVYHGQHTCK 207
                                   999************************98899*******99875222255423335678999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-19135208IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-22135208IPR003657WRKY domain
SMARTSM007744.6E-26138208IPR003657WRKY domain
PfamPF031061.4E-22140207IPR003657WRKY domain
PROSITE profilePS5081115.307140180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKRHHHPNNS KMSQLPGQPP ACSRVCDHGS AMKEIAKEQS LVTQLRAIVL PALQADERSE  60
LVAQMFQDVL DCSSKAMAEL QLLHDKSDDD ALLVDDKKRV RRINPNEVDK EDVIKPHQKH  120
NSRRRFADSV PLETPVPHYD GRQWRKYGQK KINKEKYPRS YYRCTYRQEQ GCKATKTVQQ  180
QDESAGTDPT TAAVMYTVVY HGQHTCKQGT NGSDSGADGG FETKTTTVLQ SSSDDSRSSV  240
SKNCLEHPCS DQLQSSLDGR NEPINGSAEF IAENSMYEAF DMTAASALLE LDSCWDLDAL  300
LRSCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-121402071069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01963.1.g00120.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.11e-100probable WRKY transcription factor 63
TrEMBLK3Y9722e-98K3Y972_SETIT; Uncharacterized protein
STRINGPavir.Cb02194.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-18WRKY family protein