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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01963.1.g00090.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 33790.5 Da PI: 6.5034 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61.9 | 1.1e-19 | 146 | 211 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 Dg++WrKYGqKe+++ ++prsYYrCt++ gC+++k v++++e + + +++Y+g+H+++ Zpz_sc01963.1.g00090.1.sm.mk 146 DGHQWRKYGQKEINKEKHPRSYYRCTYKqeqGCKATKTVQQQDEGTGadhaavMYTVVYHGQHTCK 211 9**************************98999********99854322222227799*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.66E-20 | 141 | 212 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.2E-23 | 143 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-29 | 144 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.376 | 146 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-23 | 146 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MKRHHNPNNN SKMSLISGQP PACYSPSRTV CDHGSAMKEI AKEQSLVTQL RAIVLPALQA 60 DERSELVAQM FQDVLDCSSK AMAELQLLHD KSDDDTLLVD DKKRVRRINP NGLNKEDVIK 120 PHQKHNSRSR RFADSVPLET PIPHYDGHQW RKYGQKEINK EKHPRSYYRC TYKQEQGCKA 180 TKTVQQQDEG TGADHAAVMY TVVYHGQHTC KQGNSCSDSG ADGFEAKIAV PSGSDDSRSS 240 ISKNCLECPC DQQSSRDGSN KLINESADLN AENNMYEAFD MTASAFLELD SWDLDALLRS 300 DA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-14 | 146 | 211 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01963.1.g00090.1.sm.mk |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805419.1 | 1e-101 | probable WRKY transcription factor 62 | ||||
TrEMBL | A0A2T8KGK4 | 1e-100 | A0A2T8KGK4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb02194.1.p | 1e-103 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 2e-17 | WRKY family protein |