PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01933.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 739aa    MW: 79009.3 Da    PI: 10.5917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01933.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12290334147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Zpz_sc01933.1.g00060.1.am.mkhc 290 RESWTEPEHDRFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 334
                                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-16284340IPR009057Homeodomain-like
PROSITE profilePS5129414.75285339IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-5288340IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18288337IPR006447Myb domain, plants
SMARTSM007176.7E-10289337IPR001005SANT/Myb domain
PfamPF002494.0E-10290334IPR001005SANT/Myb domain
CDDcd001677.89E-7292335No hitNo description
PfamPF101914.7E-29518611IPR019335Conserved oligomeric Golgi complex subunit 7
PfamPF101913.4E-44631735IPR019335Conserved oligomeric Golgi complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0017119Cellular ComponentGolgi transport complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MATARWPVAD DNGQQLSPLH PASLKKWLRF AGAGARRCRA QSRASTPASR NTLPPTNRRL  60
PAHRAGPGNA RDVPRAATSH QPHSSSPPAG CAEPNQLPSP RAPTNGPARR PQRNPAHRTW  120
TPHVSVPCRL CGQERTDRKR RETSTSPGAR PIPSASAVKS SSSPSLLRSP KTPPNSSSER  180
AGTRAGTRGG KKKKNSSEGK TLACSNSKQG PHRLMVSMST TPTPLDAAKS ASVAGGGVDE  240
GGGGGGKQPL MRGAAVAMVA PPPMAVPAPD PAAGEEVRKV RKPYTITKSR ESWTEPEHDR  300
FLEALQLFDR DWKKIEAYVG SKTVIQIRSH AQKYFLKVQK NGTGEHLPPP RPKRKAAHPY  360
PQKASKNVSQ AVLPQQAPPL GDQGSVMSVD TSNVVRNTNP SGAGPSWDNA LVQPSNASQG  420
AVVTNNCSSS IESPSGTWPA SEAVEQENMV PPLRGEHSLS VTLTPYETVH KIVIVLSRGK  480
LAPANKTVQV FAELRGRKSA LKSEPARLGV LAEMVVVDAS EFGAEGFDPK RWINAALDGR  540
HPSEPLDRFL ADAEERLRAA ADDAAAALER DSGDALRRIP LACRDALRLR EDAVALRSHL  600
ASVLQSLSQV PSSVLIGSGS RTTLDWFARI AEGSSAESIT ALARIDTVKQ RMEAAYATLQ  660
DAAGLAQLSQ SVEDVFSSGN LPKAAETLAT MRHCLSAVGE VAEFANVRKQ LEVLEERLDE  720
MVQPRLVEAL CSRKVFSLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141DRKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01933.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-41MYB_related family protein