PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01926.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 445aa    MW: 47355.4 Da    PI: 9.4133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01926.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056266288123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC+ CgksF +   L  H  tH
  Zpz_sc01926.1.g00030.1.am.mk 266 FKCSVCGKSFGSYQALGGHKTTH 288
                                   89********9999998888887 PP
2zf-C2H211.60.00085340362123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F++   L  H r+H
  Zpz_sc01926.1.g00030.1.am.mk 340 HRCSICHKEFPTGQALGGHKRKH 362
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0087266288IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4266291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12266290IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.986266293IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-9266288No hitNo description
PROSITE patternPS000280268288IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-9335362No hitNo description
PfamPF139122.4E-12339364IPR007087Zinc finger, C2H2
SMARTSM003550.043340362IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058340362IPR007087Zinc finger, C2H2
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDMDRALPGQ RRPQAGWHMF VVIRLLPATT VSHIQPTSDG AAALSSFPPP LPAAEASGAP  60
RLPLRLLPVR AFPSTLTTTF SLMRCRPAVH HTSTGTRPSQ PPHLPHPRRN FPNLTPATAL  120
KSPHSTPHPH TPHHSESRER GAQQATASTA TASTERNNSR SGLEQPKLEL SLIPIAMTTA  180
MELLHAALPE QQRHEQEEEV ALTTSSSGDE GAHVPQGWAK RKRSRRQRSE EENLALCLLM  240
LSRGGNHRVQ APPPPAEPLT AAAAEFKCSV CGKSFGSYQA LGGHKTTHRA KQPARPATSG  300
PVVEDAVPIS AIPPTVAELR EPATSSTAAS SDGTTASRVH RCSICHKEFP TGQALGGHKR  360
KHYDGGVGNS AAASAELPAV AAAAAETSEV GSSGNGSSAA RAFDLNLPAL PEFVWRCAKA  420
GTMWEEDEEV QSPLAFKKPR LLMTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01926.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5960641e-126KT596064.1 Zoysia japonica cultivar Companion C2H2-type zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-107zinc finger protein 1
SwissprotQ424301e-100ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ201e-119A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGSb01g007170.11e-106(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-25zinc-finger protein 2