PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01915.1.g00110.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 330aa MW: 33950.7 Da PI: 9.5181

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01915.1.g00110.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	57	117	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Zpz_sc01915.1.g00110.1.am.mk 57 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 117 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	53	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-33	59	115	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	61	115	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	63	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MEEMIMAGNP YPNQNRNPAP AAPSAPGPQR AGGAPAAGAS SGAAAGAGTE RRARPQKEKA 60 LNCPRCNSTN TKFCYYNNYS LQQPRYFCKT CRRYWTEGGS LRNVPVGGGS RKNKRSSASV 120 SAAAAVATSA AMVPVGLAAK NPKLMHEGAQ DLNLAFPHHN GRGLQPPEFA AFPSLESSSV 180 GAFSALDLLR STGCYVPLQH VQLGMHAEYE SAGFALGELR MPPPPQSQSM LGFSLDTHGT 240 GGVGGAGGYS AGLQDSAAAG RLLFPFEDLK PAVSAGGGVA NAGGNQYKHN KDQGGDGRSA 300 SRVTGGHDTP GFWNNSMIGN GSSNGGGGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01915.1.g00110.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582410	1e-131	KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826521.1	1e-142	dof zinc finger protein 2-like isoform X2
Swissprot	B9F1L8	1e-115	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A1E5VJZ3	1e-144	A0A1E5VJZ3_9POAL; Uncharacterized protein
STRING	Pavir.Aa00902.1.p	1e-141	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-47	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]