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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01913.1.g00090.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 116aa MW: 12413.1 Da PI: 8.14 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00096 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cg + s ks+ + H H Zpz_sc01913.1.g00090.1.sm.mkhc 43 YKCEFCGVVRSKKSLIRAHVLEH 65 9**************99999985 PP | |||||||
2 | zf-C2H2 | 26.8 | 1.2e-08 | 89 | 110 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+F+ + +Lk+H+++H Zpz_sc01913.1.g00090.1.sm.mkhc 89 ECEKCGKRFKKPAHLKQHMQSH 110 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.69E-9 | 41 | 110 | No hit | No description |
SMART | SM00355 | 9.4 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.424 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0016 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 5.7E-6 | 89 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-7 | 89 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MGGRAGGPVA GGEEESGCGD GMAGTTVATA GATPAPVRDV RRYKCEFCGV VRSKKSLIRA 60 HVLEHHKDDV DGVEAYQGCG VPSKELIQEC EKCGKRFKKP AHLKQHMQSH SLETTY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01913.1.g00090.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566649.1 | 7e-34 | transcription factor IIIA isoform X1 | ||||
TrEMBL | A0A2T7E7G6 | 2e-33 | A0A2T7E7G6_9POAL; Uncharacterized protein | ||||
STRING | BRADI2G37790.1 | 3e-33 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17974 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 9e-19 | transcription factor IIIA |