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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zpz_sc01842.1.g00050.1.sm.mk |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 332aa MW: 34790 Da PI: 9.617 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01842.1.g00050.1.sm.mk | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.9 | 1.3e-06 | 132 | 157 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
Zpz_sc01842.1.g00050.1.sm.mk 132 KTRMCNKYNTAEGCKWGSKCHFAHGE 157
89**********************96 PP
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| 2 | zf-CCCH | 35.1 | 2.2e-11 | 298 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +G+rC+FaHg+
Zpz_sc01842.1.g00050.1.sm.mk 298 FKTKLCENFNK-GSCTFGERCHFAHGE 323
69*********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 6.2 | 68 | 91 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 7.385 | 79 | 92 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-14 | 127 | 162 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.58E-8 | 129 | 161 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.97 | 130 | 157 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.727 | 130 | 158 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 6.72E-13 | 199 | 271 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 4.0E-9 | 201 | 271 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 3.3E-14 | 202 | 270 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 13.754 | 202 | 266 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 4.2E-9 | 204 | 268 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-16 | 295 | 329 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.474 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.4E-7 | 297 | 323 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-8 | 297 | 328 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.8E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MDSGRKRTAP EGANGAKRPK VTASVDAFPL GGGRALRLEL LAGWICEVMA PWFAAWPPLV 60
EIRSFAAHTV FPLCSTAGCP FGASCHFLHN FPGGYQAVAK MTNLGGPPVP SPMGRMPMGP 120
GVPDGPPTPS VKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPMPLNNSV GGPPMGPGPN 180
GHFMPPPMPV PDMVPPSTFG ASATAKISVD AFLAGGIIGK GGINTKHISR VTGAKLAIRD 240
NEADPNLKNI ELEGTFDQIK HASAMITELI VHIGGKAPQQ TKNNTGRGSH AGGPGSNFKT 300
KLCENFNKGS CTFGERCHFA HGEGELRKPA AA
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