PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 211aa MW: 22394.8 Da PI: 8.9638

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01826.1.g00080.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.2	5.6e-38	102	201	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++ Cv+apyfp ++++kfa vh++FGasnv+k+l+++p+ r da++sl+yeA+ar+rdPvyG+v+ il Zpz_sc01826.1.g00080.1.am.mk 102 PCAACKLLRRKCTQVCVFAPYFPPDNAAKFASVHEVFGASNVSKILNDVPQALRGDAANSLAYEADARIRDPVYGCVAYIL 182 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq ++++ +a ++++ +e Zpz_sc01826.1.g00080.1.am.mk 183 ILQCKVKEISAGIDAASKE 201 ******99988877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.264	101	202	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-38	102	197	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSNGNDGSGG MYSPPALGPS AFDNNGASLS AVVGVAKRVV ILACCALVSR ERMLCLVDMK 60 PDGILLFPTN PSRARSGSPR AQPRYAPPPR GDRRSMSSSI SPCAACKLLR RKCTQVCVFA 120 PYFPPDNAAK FASVHEVFGA SNVSKILNDV PQALRGDAAN SLAYEADARI RDPVYGCVAY 180 ILILQCKVKE ISAGIDAASK ELDHLASRTS Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-40	101	202	10	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-40	101	202	10	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01826.1.g00080.1.am.mk

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466819.1	2e-50	LOB domain-containing protein 36
Swissprot	Q9FKZ3	4e-44	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A287N9X4	3e-49	A0A287N9X4_HORVV; Uncharacterized protein
TrEMBL	A0A3B6HYL9	5e-49	A0A3B6HYL9_WHEAT; Uncharacterized protein
TrEMBL	A0A446R5Z5	5e-49	A0A446R5Z5_TRITD; Uncharacterized protein
TrEMBL	C5WSB6	5e-49	C5WSB6_SORBI; Uncharacterized protein
STRING	Sb01g014650.1	9e-50	(Sorghum bicolor)
STRING	Traes_4AL_C060BF9F6.3	9e-50	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP75232	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-47	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]