PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 367aa MW: 39900.8 Da PI: 8.9174

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01818.1.g00010.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	76.7	3.6e-24	73	123	2	52
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 C vegC+adls+ +eyh rhkvCe+hsk+pvv+v+g++qrfCqqCsr + Zpz_sc01818.1.g00010.1.am.mk 73 CSVEGCTADLSKGREYHLRHKVCEAHSKTPVVVVAGQQQRFCQQCSRIDPI 123 ***********************************************8765 PP
2	SBP	48.3	2.8e-15	202	233	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l efDe krsCr+rL++hn+rrrk+q+ Zpz_sc01818.1.g00010.1.am.mk 202 PRFHLLGEFDEIKRSCRKRLDGHNRRRRKPQP 233 69***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.6E-25	65	124	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.862	70	147	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-23	71	124	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-19	73	124	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	12.81	153	231	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-12	200	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-7	203	230	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDWDTKMPSW DLGTVVGPSS GGGGGALDLK LGGPTSWKSA ATAAAVPPPP PSSSSAPAKR 60 PRSGQAHQAV PACSVEGCTA DLSKGREYHL RHKVCEAHSK TPVVVVAGQQ QRFCQQCSRI 120 DPIEYDRSTK PDFSAADYDS SFHGRNSKTW GLIWSCTAQR TETLVTPPFA GWLLLRARAF 180 WASPRQRNAA DAVELDFGVE PPRFHLLGEF DEIKRSCRKR LDGHNRRRRK PQPDPLNPGV 240 LFANHHGATR FASYPQLFSA ASMADPKWPA TMVKTETDVF HDHYVPAVHL NYGASSLFNG 300 KDWKHFPFLT PHGDDAAAAL GCQPFTITAS SESSSSKQNN GHRALSLLSD NQTPAQLMIP 360 TAQPLGA

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDWDTKMPSW DLGTVVGPSS GGGGGALDLK LGGPTSWKSA ATAAAVPPPP PSSSSAPAKR  60
PRSGQAHQAV PACSVEGCTA DLSKGREYHL RHKVCEAHSK TPVVVVAGQQ QRFCQQCSRI  120
DPIEYDRSTK PDFSAADYDS SFHGRNSKTW GLIWSCTAQR TETLVTPPFA GWLLLRARAF  180
WASPRQRNAA DAVELDFGVE PPRFHLLGEF DEIKRSCRKR LDGHNRRRRK PQPDPLNPGV  240
LFANHHGATR FASYPQLFSA ASMADPKWPA TMVKTETDVF HDHYVPAVHL NYGASSLFNG  300
KDWKHFPFLT PHGDDAAAAL GCQPFTITAS SESSSSKQNN GHRALSLLSD NQTPAQLMIP  360
TAQPLGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	4e-16	73	124	6	57	squamosa promoter-binding protein-like 12
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	230	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01818.1.g00010.1.am.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971091.1	5e-76	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	3e-47	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	K3XIT1	1e-74	K3XIT1_SETIT; Uncharacterized protein
STRING	GRMZM5G878561_P01	1e-115	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-19	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]