PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc01815.1.g00070.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 726aa MW: 77124.2 Da PI: 11.3823

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01815.1.g00070.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.2	8.6e-36	279	450	8	134
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasns 85 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a s++ +++ssssa+ + Zpz_sc01815.1.g00070.1.am.mk 279 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvfvSSSAPSTSSSSAHYQ 359 489*****************************************************88888444222333333333322 PP TCP 86 ssg..........................................kaaksaakskksqksaasalnlakesrakararare 124 +++ + +++a++ + +a++lnl + +a a ra+e Zpz_sc01815.1.g00070.1.am.mk 360 QQQtvlgkrpreesdatvsvaaaasafwaalptsaprsteaswgfSPLEAQATTTYVPMAQAHHLNLIAALSAGAARRAEE 440 222456777888888999999999999999999999999999998555555555555555556899999999***** PP TCP 125 rtrekmrikn 134 +tre i++ Zpz_sc01815.1.g00070.1.am.mk 441 ETRETTGIRT 450 *9988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-30	278	365	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	279	333	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MSTVAAPSFP LVVSSLHGVS DHKSPTVTLT ANEFSVTDGN DAVRMGDPIQ LYAESELATQ 60 TRTLSKTRKA TLVARPFAPP FQHRSSEAVS LFRYDNGSQP HRQRRPLARA VDFIIPDAGV 120 SPSVGRSRHS VVTPPGLPCS RLTAATQPCV QPCTRPSRPG DGPPRGPGPH ARRQPLTPKS 180 GGASCTAPRV DVHSSGMQLG GMPSPATIWI SPLSNATRQP TGAMATRDVS TAAAAAAASM 240 FHVYQPWQVP STAVTAAATD GALAVPATTP GKKKASQGGK DRHSKVNGRG RRVRMPIVCA 300 ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSAHYQQ 360 QQTVLGKRPR EESDATVSVA AAASAFWAAL PTSAPRSTEA SWGFSPLEAQ ATTTYVPMAQ 420 AHHLNLIAAL SAGAARRAEE ETRETTGIRT AGEQITAMID TGESQSNSIS PRRSLFLHDT 480 SLSLCSEGKG KCGKRLRRLH PLSSLAAARP PLKTLPLRMK KGRGRCVCVC APGRFGSRTH 540 ARAYADRCNA QYSCGAALSC SPCRAPARLL TTKPAYVHRP GGARARASMD TTTPSDEAES 600 FGARDRDETG RSPPVLGAGS SRRDARSGSR CPAGAPYRTF AVRRPACRLR LVWQAAKERP 660 NFVRESRLDP ATTSRRKNTL PARHGTARRG AVLGASLECR AEQVAGADSQ LHRRPRAAVD 720 NRRCVY

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MSTVAAPSFP LVVSSLHGVS DHKSPTVTLT ANEFSVTDGN DAVRMGDPIQ LYAESELATQ  60
TRTLSKTRKA TLVARPFAPP FQHRSSEAVS LFRYDNGSQP HRQRRPLARA VDFIIPDAGV  120
SPSVGRSRHS VVTPPGLPCS RLTAATQPCV QPCTRPSRPG DGPPRGPGPH ARRQPLTPKS  180
GGASCTAPRV DVHSSGMQLG GMPSPATIWI SPLSNATRQP TGAMATRDVS TAAAAAAASM  240
FHVYQPWQVP STAVTAAATD GALAVPATTP GKKKASQGGK DRHSKVNGRG RRVRMPIVCA  300
ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFVSSSAPS TSSSSAHYQQ  360
QQTVLGKRPR EESDATVSVA AAASAFWAAL PTSAPRSTEA SWGFSPLEAQ ATTTYVPMAQ  420
AHHLNLIAAL SAGAARRAEE ETRETTGIRT AGEQITAMID TGESQSNSIS PRRSLFLHDT  480
SLSLCSEGKG KCGKRLRRLH PLSSLAAARP PLKTLPLRMK KGRGRCVCVC APGRFGSRTH  540
ARAYADRCNA QYSCGAALSC SPCRAPARLL TTKPAYVHRP GGARARASMD TTTPSDEAES  600
FGARDRDETG RSPPVLGAGS SRRDARSGSR CPAGAPYRTF AVRRPACRLR LVWQAAKERP  660
NFVRESRLDP ATTSRRKNTL PARHGTARRG AVLGASLECR AEQVAGADSQ LHRRPRAAVD  720
NRRCVY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01815.1.g00070.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	1e-103	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-30	TCP family protein